BAC Information

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BAC

Clone NameMSMg01-182B10
Chromosome17 (Build37)
Map Location 22,792,192 - 22,792,503
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
Downstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182B10.T7 (MSMg01no182_b10.b1)MSMg01-182B10.TJ (MSMg01no182_b10.g1)
ACCAG375068AG375069
length727729
length of high quality
(start - end)
486 (73 - 558)315 (46 - 360)
definitionCHROMAT_FILE: MSMg01no182_b10.b1 PHD_FILE: MSMg01no182_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:44 2005CHROMAT_FILE: MSMg01no182_b10.g1 PHD_FILE: MSMg01no182_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTAGCATATACATGAATGTTGTCTCTA
CCATGAGATCCAGCTTTATACACTTCTCACATTCATGCTATTTGTATGTG
TCTACTCCAGAATGCAAATTCTAAAGCTGAATGCCACATAATTAATAAAG
CACAAGAAAGGGTTTCCTGAAGGAAAAGCTTTCAGGTGGTATTAAATTTT
ATTTACTTTATAAAGGTTTGACAAATTCCTTACATTTCTTGGGGTTCTCT
AGTGTGAACATTCTAACTTTTGATCAGACATGAATCCAAAACAACATGAA
ACAAGTAAATACTTTTTTTTTTCCAACATGAACTTTTTAATGAACACTTT
TGAATTAAAAACTACCCACTCAAGTACATGTTGAATGGGAAAGTGTGTGG
CAGACTATTTGTGGTCAGATATAACACATTTATACATCTATGAATCATAA
AAACAGAAATAAAATTGGCTCCAAGTGTACATAATGATGAAGTGCTATGT
GATGAGCCATAGAGTTTTCTTTTACAGGAATATGGGCAACGCGTTAAAGG
GATCCAAAGAATCTCTATAAAGTCCACCAAATTATGTTACAGCCTCATGA
ATTCCTCATACCAGGAATGCATCAATAATTTTTCGATAGCCCCATGGCAT
TACTGAATGCCCTTCCCTGCCTGCCTC
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAATGAGGTAAGGCTGTTGATCCCGGTGGGACGCAGGTCCGCTC
TGAAAAACAATGGCTTTAACTTTAAAGATAAGTGTCAAACCAAAAGTCTC
CTCCAATGACCATTTTACATTAAAAGTCGTCCACTCGAAGGCGCAAAAAG
TCTGCCAAGGTCCCTTCTTAATTTTTACTGAAAGATTATGGGCCCTTGAT
CTAACTTCAGTCCAGTGGTCTAAAGTCAAACTTGGGGGTGGGGGGTCATT
ACAGTCCTTCTAATATCACAGAAAACAGACACAAAACACACACACTGACA
AATACCTGATTTTATTCACACCCCCCACACACACACACTGACAAATGCCC
GTATTCTAAAGGACCCCCCCCAACCAACTCTTAATTGCTAAAAAAGTTGG
GGAAGTGCTTAAGTCTTCCATTCTAGGACGACTACCAACTTTTTATTTCC
CACCCCAGACTTACTCCTGGAGTCATTCCCCACCATTAAGTCTCCCCCTA
TAGTCACGCAGTTTCCTGTTGATCCTATCAAGTATTGCAGCATTATATTA
CAAGATTTTTTCCTTCACCTATTAATTTTCTCCTCCACTCTAAGTAATGC
CTTCTTCTTGTTATTTTTAAATTAACGACTCTCCCGAAATAATATACACA
TATTATTTATTTTTTCACATAAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_b10.b1 MSMg01no182_b10.b1 CHROMAT_FILE:
MSMg01no182_b10.b1 PHD_FILE: MSMg01no182_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:44 2005
         (486 letters)



>mm_chr17_22791992_22792873
          Length = 882

 Score =  580 bits (300), Expect = e-170
 Identities = 311/316 (98%), Gaps = 4/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagcatatacatgaatgttgtctctaccatgagatccagctttatacacttctcacat 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 512 cctagcatatacatgaatgttgtctctaccatgagatccagctttat--acttctcacat 455

                                                                       
Query: 61  tcatgctatttgtatgtgtctactccagaatgcaaattctaaagctgaatgccacataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcatgctatttgtatgtgtctactccagaatgcaaattctaaagctgaatgccacataat 395

                                                                       
Query: 121 taataaagcacaagaaagggtttcctgaaggaaaagctttcaggtggtattaaattttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taataaagcacaagaaagggtttcctgaaggaaaagctttcaggtggtattaaattttat 335

                                                                       
Query: 181 ttactttataaaggtttgacaaattccttacatttcttggggttctctagtgtgaacatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 334 ttactttataaaggtttgacaaattccttacatttcttggggttctctagtgtgaagatt 275

                                                                       
Query: 241 ctaacttttgatcagacatgaatccaaaacaacatgaaacaagtaaatactttttttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 274 ctaacttttgatcagacatgaatccaaaacaacatgaaacaagtaaatac--tttttttt 217

                           
Query: 301 ccaacatgaacttttt 316
           ||||||||||||||||
Sbjct: 216 ccaacatgaacttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 882
Length adjustment: 10
Effective length of query: 476
Effective length of database: 872
Effective search space:   415072
Effective search space used:   415072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)