BAC Information

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BAC

Clone NameMSMg01-182H10
Chromosome17 (Build37)
Map Location 55,244,182 - 55,244,283
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178
Downstream geneLOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182H10.T7 (MSMg01no182_h10.b1)MSMg01-182H10.TJ (MSMg01no182_h10.g1)
ACCAG375339AG375340
length713808
length of high quality
(start - end)
591 (77 - 667)107 (42 - 148)
definitionCHROMAT_FILE: MSMg01no182_h10.b1 PHD_FILE: MSMg01no182_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:13 2005CHROMAT_FILE: MSMg01no182_h10.g1 PHD_FILE: MSMg01no182_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAA
AAGCAATCTACAGCAAACCAGTAGCCAACATCCAAGTTAATGGAGAGAAG
CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC
TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC
AACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATA
TCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTC
TACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGAT
ATAAAATAAACTCAAACAACCCAATGGCCTTTCTCTATACAAAGAATAAA
CAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTATCAATAGTCACAAA
AATATAAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTA
TGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAA
GATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAA
ATGGCTATCTTGTCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAA
AATTCCAACTCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGCTCATGAGTGCCTTGCTCCTTAAGTTTCCTTTTTGGTAATTTTGCC
CATTTTTTTTGTCAACTTATTTGATCAAAATTTGTGTCTGTGTGTGTGAC
TGTGTGTGTGTGTGTGTGCGATATTTCCCCCTCTTAATTAATTCCTCCCC
CCCCCCCCCTCACCCCCCCCCCCAAAAAAAATAAAAATACACCAACCTCC
ATCTATTTTATAACACACACACACACTCCCCCCTATACTACCTCACCCCA
CTCAAAAAAATATTTTTATACTATTCTCCTCAAAACCTCTCCTAAACACA
AATTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTATAAAAATATAAATTTT
TCTTCCCTTTTTTTTCCCCCCCCCCCCCCAAAAAAAAATTCTCCCTTGTT
TACTTCCTTTCTACATCTCCCTCCCCTCATTACTCTTCTTACTCCCCCCC
CATTTCCTCCTACCCCACCAACTCCACTCCCAATAAATATATCCCCTCCC
CCCTCAACTTAATAACCCCTCTATTTACCTTTCTTTTACCACCCTTCACT
ATCTTCTCCCCCCTTTTTTTCCTCTCCCACCTTACCTTCCCATTCCCCCC
TCAATTTATTTCCCCCACTAACTCATTACTCCTTTATTCCTCCCTTCCTA
CTTATATTTTCTCCTCCCCCCTAACTTATCTCCTTCTTTCATTTTTATAT
AAAACCAAATACTCCCCCACAACAAAAACACTATTAATTAACCTTTCCTA
ATAAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_h10.g1 MSMg01no182_h10.g1 CHROMAT_FILE:
MSMg01no182_h10.g1 PHD_FILE: MSMg01no182_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:13 2005
         (107 letters)



>mm_chr17_55243978_55244483
          Length = 506

 Score =  176 bits (91), Expect = 3e-49
 Identities = 100/103 (97%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgctcatgagtgccttgctccttaagtttcctttttggtaattttgcccattt 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 306 gaattcctgctcatgagtgccttgctccttaagtttcttttttggtaattttgcccattt 247

                                                      
Query: 65  tttttgtcaacttatttgatcaaaatttgtgtctgtgtgtgtg 107
           |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 246 tttt-gtcaacttatttgatcaaaatttgtgtgtgtgtgtgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 506
Length adjustment: 8
Effective length of query: 99
Effective length of database: 498
Effective search space:    49302
Effective search space used:    49302
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)