BAC Information

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BAC

Clone NameMSMg01-182M12
Chromosome17 (Build37)
Map Location 40,365,820 - 40,366,109
singlet/doubletsinglet
Overlap geneCrisp3
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2
Downstream geneCrisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182M12.T7 (MSMg01no182_m12.b1)MSMg01-182M12.TJ (MSMg01no182_m12.g1)
ACCAG375566AG375567
length772720
length of high quality
(start - end)
296 (47 - 342)645 (76 - 720)
definitionCHROMAT_FILE: MSMg01no182_m12.b1 PHD_FILE: MSMg01no182_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:37 2005CHROMAT_FILE: MSMg01no182_m12.g1 PHD_FILE: MSMg01no182_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAACCCCCTGCACACCAGGAATGAATATGGAGCATGTGTCAGA
GAAAAAATAATGCAGAAAAACAAATAGACAATGTAAACTTAAAAGACTTT
TAGTATAGTTTGTTACTATATGCCTTCTGGACTTACTTAAATGACTGAAT
CACACTACAAATGTTTAAAGAACCCTCAGAGCCTATTTTGATCAGCTATT
CCAGTAAAGCTTACAGAAAGCACATAGGGGAGTTTAGGGAGGCTGGCAAC
TGTTCCAGCCTCATGTCTAGAACTCTGTTGTTCTTCCAGTGCATTATTGA
CAGTTTCCAACATGATGATAAAGCAAAAGGTATTCTATGATGTCAATGAT
CTTCATTTCCCCCCCCCAGACATCATAAAGCCCCGTTATACCTCTATTAC
CGTCGTTGACAAGGATAATTTCCTCTGCTTTCTTAACTTCCTAGTCTTGT
GTTCTTTATTCCTTCTTTTATTACTACTTCCTGTTATTCTCTGTTCTCCT
TCCTATTTCAACTCTTCTTTCTGCTCTCTTGATATTCTCTTCCTCTCATT
CTTTTAATCTTTGTCCTTCTCGTTATCCTGTCACTCTCCTCGACTCTCAC
ATCTATTATTTCCTATCACCTATTATGATATGATTTATAACGCCTCGTAA
TATGTCCTTCATTTTCTCGTTATTTTATTTTCTTCTTTCTTATTTTCTAC
CACCCCTATTTATTCCATCTTN
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATGCCAAATGGCTG
AGAAGCACCTTAAAAAAAATGTTCAGCATCCTTAATCATGAGGGAAATGT
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCATAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGACGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGAGATTGCAAGGTGGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAAAAAATTGGACATTGTACTACCAGAGGAT
CCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAAAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACCCAATCTCAAAAGAACTCACATGATATGTACTTACTGATA
AGTGGATATTAGCCCAGAGACTTAGAATACCCAAGATATAAGATACAATT
TGCAAAACACATGAAACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_m12.b1 MSMg01no182_m12.b1 CHROMAT_FILE:
MSMg01no182_m12.b1 PHD_FILE: MSMg01no182_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:37 2005
         (296 letters)



>mm_chr17_40365613_40366309
          Length = 697

 Score =  400 bits (207), Expect = e-116
 Identities = 270/291 (92%), Gaps = 3/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttccaaaccccctgcacacc-aggaatgaatatggagcatgtgtcagagaaaaaataatg 66
           ||||||||  |||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttccaaacaacctgcatacccaggaatgaatatggagcatgtgtcagagaaaaaataatg 267

                                                                       
Query: 67  cagaaaaacaaatagacaatgtaaacttaaaagacttttagtatagtttgttactatatg 126
           |||||||||||||||||| || |||||||||| || ||| ||||| ||||||||||||||
Sbjct: 268 cagaaaaacaaatagacactgcaaacttaaaacacctttggtatactttgttactatatg 327

                                                                       
Query: 127 ccttctggacttacttaaatgactgaatcacactacaaatgtttaaagaaccctcagagc 186
           | |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct: 328 ctttctggacttacttaaatgattgaatcacaatacaaatgttaaaagaaccctcagagc 387

                                                                       
Query: 187 ctattttgatcagctattccagtaaagcttacagaaagcacataggggagtttagggagg 246
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 388 ctattttgatcagctattccagtaaagcttacagaaagcatataggggagtttagggagg 447

                                                              
Query: 247 ctggcaactgttccagcctcatgtctagaa-ctctgttgttcttccagtgc 296
           |||||||||||||||||||||| || |||| | ||| |||||||| |||||
Sbjct: 448 ctggcaactgttccagcctcatctc-agaaacgctggtgttcttctagtgc 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 697
Length adjustment: 9
Effective length of query: 287
Effective length of database: 688
Effective search space:   197456
Effective search space used:   197456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)