BAC Information

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BAC

Clone NameMSMg01-182P17
Chromosome17 (Build37)
Map Location 94,309,468 - 94,309,699
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
Downstream geneLOC668885, LOC668886, Mettl4, 2700099C18Rik, LOC100043754, LOC668888, LOC100038868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182P17.T7 (MSMg01no182_p17.b1)MSMg01-182P17.TJ (MSMg01no182_p17.g1)
ACCAG375713AG375714
length815714
length of high quality
(start - end)
227 (123 - 349)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no182_p17.b1 PHD_FILE: MSMg01no182_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:52 2005CHROMAT_FILE: MSMg01no182_p17.g1 PHD_FILE: MSMg01no182_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATACATATATAACATTCGACAAAAAAAAATAACCCAACTATAAAAAACA
ATTTGGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGGAAATCCATCCACAATTCCAAAGAATAAATGAA
AGACAAAAAAAAAATGAGGTTCCCAAGAGACTATCATCCTGTTGAGAATT
ATAGATATATTCATATGGAATTTTAAAATATTTTATTGGCATATATTAGT
TATATAATATCCTTCTTGATTTTGTTGTGGCAATGATAGTATGCATCATC
CCTTAGTGTTAATAATATTATACATTCTGTGACTCTGTTTCCTTGCCAAA
TGCGTGAACTTTATGTTTGACAAGAACAAGTATTAAAAGTTTGTCCAACT
CCTGAGGAGAAAATATATATATTTTTTAACCACACCTCGACATTTACATT
TGCTCACCTTAATGCACCAGAGTCCACCCTCACCTTTGCAGGAGCATCAT
GCTCATAATGGTTCAACACCTTGGGAACCACCATGTAGATGAAAAAAGCA
CACCTTCAGGTTGAACACAAAATAAGGAAGAGGACGAGATCACTGTATTA
AGTTTCTTAAGACTCATTGTCCATAATCATCCGCCCTTGTCTTCCAATGG
ATGCTTTTATTAACAATAATTAGTATACTTTTCTTGAGTTCTCCCTTGCC
AATGAACATTAATATTAAGCGACACTCATTATCCGAATAATTCACTCCAT
CTCGCCCTTACTTACTTTCTTCCCCCCCACCGCCCCATTTCTCTTCCCCC
CCTTTATATTTTATG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAATCTTTCCAAGACTTTTAACATGA
AGGGATGTTGAATTTAGTCAAATGATTTTCAGCATCTAATGAAATTATCA
TGTGGTTTTCTCTTTGACTTTGTTTATGTAGTGGATTACATTGATGGATT
TCCACATTGAACCATCCCTGTATCCCTGGGATGAAGCCTACTTGGTCATG
GTGAATGGTCATTTAGATGTGTTCTGAGATTCATTTTAGGATAATTTTAT
TGAGTATTTTTGCAATGATATTCATAAGGGAAATTGGTCTGAAGTTCTAC
TTATTTGTTGGTTCTTTGCCAGCGCCTGGTATCAGTGTAACTGTGGCTTT
ATAAAACGAATCCCCCACCGATCCCTTTGTTTCTATTTTGTGGAATAGTT
TGAAGAGTATTGCTATTAGGTCTTCTTTGAAGGTCTGATAGAATTCTGCA
CCACCCCCATCTAGTCCTGTGACAGCTTTTTTGCCTGTTTAATAGTATGC
TTTTTTATCCCCCTTCCCCTTTTCCCATTTTTTCCACTCCCCTTTTTTTT
TATCTCCCTTCCTTCCTCCCCCCCTTTCCCTCTCCCTTTCACCATACATT
CTCATCAATTCTTTCTCTTTTCCTATTCCTCTTTGCCCTTTCACTTCCTT
TTTTCCTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_p17.b1 MSMg01no182_p17.b1 CHROMAT_FILE:
MSMg01no182_p17.b1 PHD_FILE: MSMg01no182_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:52 2005
         (227 letters)



>mm_chr17_94309268_94309899
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 226/232 (97%), Gaps = 5/232 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatccacaattccaaagaataaatgaaagac-----aaaaaaaaaatgaggttcccaag 55
           ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||
Sbjct: 432 ccatccacaattccaaagaataaatgaaagacaaaaaaaaaaaaaaatgaggttcccaag 373

                                                                       
Query: 56  agactatcatcctgttgagaattatagatatattcatatggaattttaaaatattttatt 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agactatcatcctgttgagaattatagatatattcatatggaattttaaaatattttatt 313

                                                                       
Query: 116 ggcatatattagttatataatatccttcttgattttgttgtggcaatgatagtatgcatc 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggcatatattagttatataatatccttcttgattttgttgtggcaatgatagtatgcatc 253

                                                               
Query: 176 atcccttagtgttaataatattatacattctgtgactctgtttccttgccaa 227
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 252 atcccttagtgttaataatattatacattctgtgactctctttccttgccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 632
Length adjustment: 9
Effective length of query: 218
Effective length of database: 623
Effective search space:   135814
Effective search space used:   135814
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)