BAC Information

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BAC

Clone NameMSMg01-183P15
Chromosome17 (Build37)
Map Location 62,349,095 - 62,349,390
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream geneEfna5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183P15.T7 (MSMg01no183_p15.b1)MSMg01-183P15.TJ (MSMg01no183_p15.g1)
ACCAG376403AG376404
length714745
length of high quality
(start - end)
321 (46 - 366)621 (123 - 743)
definitionCHROMAT_FILE: MSMg01no183_p15.b1 PHD_FILE: MSMg01no183_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:08 2005CHROMAT_FILE: MSMg01no183_p15.g1 PHD_FILE: MSMg01no183_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACCTGAAACCATGAAATAAATATCTACAACCAAGAGAAAGTTCA
ACAGAGTTCAACAGCAAATTGGTTCACAATATATTCATAAAATAAGACAC
AAATATTGATAGCAAATATCCAGCCTTAAGAAAGCATGTGTGAGCACAAA
CATACACACACACACACACACACACACACACACGCGCACACACACACACA
TATGCACTTGTATACATGTATAAGTGTGTGCGCATAAGTGTGTGCATTAT
GCTTGTGTGTATGGATGAGAATTCAAGTAATAGCATTGTATATATAGAAT
ATTTGAGAAAATGTTTCATATACACCCAAACTGAAGTTATAGAAGAAAAT
AAATGAATGTCTATGACAGATCAGCAATTATAAAAATTAATAGATGAAAA
TTTCCAGAACACTGACTTTAAGTTATTCACCCAACTAAGATAAATTCAGA
TCAAATTATACTTAGTTTCATCAGAACAGTACAATGGAATCTACAAAAGA
GAAAATATTATAAGTAGACAAATGTGTTTTACCCAACCAATTCAAAGAAA
AAGCAATAACACTGGTAAACACTTTGGTGGCATTTTAGCAAATAAAAGTT
TTTGAGGGCCCGGAGAGATAGCTCAGCTGTTCTTCCAGAAGACCTAGACT
GAATCTGCAGCATC
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGAATGAATGCACAATTCACCCA
AAACTTGTGGGACACTAGGACAGCAGTGCTAAGAGAAAAGTTCATACCAC
TAAATGCCTTCATAATGAAATTAGTAAGATCTCTTAATAGCAACTTAACA
GCATATCTGAAACCTCTAGAATAAAAGAAGCAAGAATACCCAAGAAGAGT
GCACAGCAGAAAATAATTACACACAGGGCTTAAGAGAAAAATACAATAAA
GCAAAGAGTTGGTTCATTGAGAAAATCTACAAGATAGACAAACCCAGTAC
TCCACAAAATTGGAAAATCTAAATGAAATAGATGATTTTCTTGATAGATA
TGACTCAATAATCTAAATCAAAATCAGGTAAACATGCTAAATAGATGTAT
AATTCGTAAGAAAATAGAAGCAGTTATCAAAACTCTCTTAATTATCCAAA
TGAACAAACAAAAATAAACAGAGGCCAAATGCTTTTTAAGTGAAGAAATC
TACCCGAACTTCAAAGAAGACCATATACCAATACTTGTCAAATTCTGCAT
AAAATAGAAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAG
GGCATCATGCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATAT
GTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_p15.b1 MSMg01no183_p15.b1 CHROMAT_FILE:
MSMg01no183_p15.b1 PHD_FILE: MSMg01no183_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:08 2005
         (321 letters)



>mm_chr17_62349043_62349762
          Length = 720

 Score =  437 bits (226), Expect = e-127
 Identities = 287/320 (89%), Gaps = 26/320 (8%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacctgaaaccatgaaataaatatctacaaccaagagaaagttcaacagagtt 63
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaattctacgtgaaaccatgaaataaatatctacaaccaagagaaagttcaacagagtt 289

                                                                       
Query: 64  caacagcaaattggttcacaatatattcataaaataagacacaaatattgatagcaaata 123
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 288 caacagcaaattggtt-acaatatattcataagataagacacaaatattgatagcaaata 230

                                                                       
Query: 124 tccagccttaagaaagcatgtgtgagcacaaacatacacacacacacacacacacacaca 183
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 229 tccagccttaagaaagcatgtgtgagcacacacacacacacacacacacacacacacaca 170

                                                                       
Query: 184 cacacgcgcaca--cacacacacatatgcacttgtatacatgtataagtgtgtgcgcata 241
           ||||    ||||  |||||||||| ||||| ||       ||||         ||||  |
Sbjct: 169 caca----cacatgcacacacacaaatgca-tt-------tgta---------gcgc--a 133

                                                                       
Query: 242 agtgtgtgcattatgcttgtgtgtatggatgagaattcaagtaatagcattgtatatata 301
           |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 132 agtgtgtgcattatacttgtgtgtatggatgagaattcaagtaaaagcattgtatatata 73

                               
Query: 302 gaatatttgagaaaatgttt 321
           ||||||||||||||||||||
Sbjct: 72  gaatatttgagaaaatgttt 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)