BAC Information

Click to search

BAC

Clone NameMSMg01-184J15
Chromosome17 (Build37)
Map Location 70,942,753 - 70,943,032
singlet/doubletsinglet
Overlap geneDlgap1
Upstream geneLOC100043630, LOC623112, LOC623143
Downstream geneTgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184J15.T7 (MSMg01no184_j15.b1)MSMg01-184J15.TJ (MSMg01no184_j15.g1)
ACCAG376838AG376839
length723749
length of high quality
(start - end)
315 (59 - 373)282 (78 - 359)
definitionCHROMAT_FILE: MSMg01no184_j15.b1 PHD_FILE: MSMg01no184_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:02 2005CHROMAT_FILE: MSMg01no184_j15.g1 PHD_FILE: MSMg01no184_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTAAGAGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCAAGAGCCGCAGTGAGTGCCTTAAATCACAGA
TTGCAGACTGTATATGGGCACTGTGGACTTTGCCATAGGTAACTGGATAA
CTAATACAGCTAAGTGACTGCAGAGTCACTTAGTATATGCAAAATGAACA
CACTAGGGAAAGGGACAGGTCAGAGAGACGGAAGGACAAGACCACATGAC
ATGTCCCCATGCTTCTCAGAAACACATCAATTTAAAAGTCAGGAATTGTT
TATAGACTTTTTTTTTCAGTCAATATGTTCAGGCAGTGGTGTACTACTGG
TAACAGAAACTGTACAACAGATATTCACAGGCCCCTCGCCCCCTGTTATA
TTTTTTTAAAGAGCATTACAAGGGTTTCCACCATGGCCCCTGAAAAAAAC
AAATGCGTCTTTGTGTTCGAGCAGACTTTGACACTAACATGATATCTTCT
TTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCCAAAG
TCCCCCATACCCCCCCCACTTCCCTACCCACCCATTCCCATTTTTTTTTG
GCCCTTGGCGTTCCCGTGAACTGGGGAATAATAAGATCTGTGAGTCCAAT
GGACCTTCTCTTTTCCAGGGATGGCTTATTATTTCCCCCCTTTTGAACCA
ATATACTGATCGCAACCATAACN
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATATCTATATGTTCTATATTTA
GTAGCTGAAAAAAATGTTCCAAGATGAGGTACTGGACCTTTTCATTGACC
AGAAACCCCCCTTTTTTTACACCCAAAAGTAATTCTGATGGCTTTTGGGA
GAATTAAGAGTGCACCAGCTTTCCTCCTGTCTTTGATGACACTGGCATCT
ACAAGTCAAATTCAATGTCAAAATCAACAGGTCATTGCACCGATGTGATT
GAAGGACATTTTCACTGTATCCTGTCATCGGTCAGGTCCTAGGTGCTAAC
CCCAGGGGCATTATTATAAGCACACACCCACGATTACTCACTTGAGAGTG
GTGAGCTCTGTAAGGCACGCCTGCGTGGCCTTGAGATAGCTTTCTCTTCT
TGCAGCCACCTTGGGAGACGGCTTGGGGCTCGTGTCCGAGTCCCCACTGT
CTTCATCCCCCATGGCTTTGATGTAGCTACCACTGCGCATCCTCCGGCAC
GGGATCTCGTCTTCTTTCCCGCGAGGTGTGTACCCTGACCATTCATCCTG
GGGAAACTAGGAAGGTCAACAACTGGAAAGTTAATTTTTAATGGCAACAA
ACTCTTTTAAAGTGTCTCTTGGCTTCCTCTTCTCCAGGCTTGTTTATATG
ACTTTGTTTTAGGTTTTGTTTTTTTGAATTATTTCATATATCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_j15.g1 MSMg01no184_j15.g1 CHROMAT_FILE:
MSMg01no184_j15.g1 PHD_FILE: MSMg01no184_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:02 2005
         (282 letters)



>mm_chr17_70942553_70943232
          Length = 680

 Score =  511 bits (264), Expect = e-149
 Identities = 277/282 (98%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatctatatgttctatatttagtagctgaaaaaaatgttccaagatgaggtactggac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tatatctatatcttctatatttagtagctgaaaaaaatgttccaagatgaggtactggac 421

                                                                       
Query: 61  cttttcattgaccagaaacccccctttttttacacccaaaagtaattctgatggcttttg 120
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 420 cttttcattgaccagaaaccccc--ttttttacacccaaaagtaattctgatggcttttg 363

                                                                       
Query: 121 ggagaattaagagtgcaccagctttcctcctgtctttgatgacactggcatctacaagtc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggggaattaagagtgcaccagctttcctcctgtctttgatgacactggcatctacaagtc 303

                                                                       
Query: 181 aaattcaatgtcaaaatcaacaggtcattgcaccgatgtgattgaaggacattttcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 302 aaattcaatgtcaaaatcaacaggtcattgcaccgatgtgattgaaggacattttcacta 243

                                                     
Query: 241 tatcctgtcatcggtcaggtcctaggtgctaaccccaggggc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tatcctgtcatcggtcaggtcctaggtgctaaccccaggggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 680
Length adjustment: 9
Effective length of query: 273
Effective length of database: 671
Effective search space:   183183
Effective search space used:   183183
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)