BAC Information

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BAC

Clone NameMSMg01-185O17
Chromosome17 (Build37)
Map Location 24,625,246 - 24,779,469
singlet/doubletdoublet
Overlap geneLOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2
Upstream geneOlfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik
Downstream geneNpw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185O17.T7 (MSMg01no185_o17.b1)MSMg01-185O17.TJ (MSMg01no185_o17.g1)
ACCAG377761AG377762
length682696
length of high quality
(start - end)		533 (124 - 656)189 (103 - 291)
definitionCHROMAT_FILE: MSMg01no185_o17.b1 PHD_FILE: MSMg01no185_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:45 2005CHROMAT_FILE: MSMg01no185_o17.g1 PHD_FILE: MSMg01no185_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,778,937 - 24,779,469)(24,625,246 - 24,625,434)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTCAGGTCTGCCAGGAGCTAGCTCCTTAGGTGTTTCCGTGTTT
GATAACATGCTTTGTCCCTAGACCCACAGCTAAAGCTGTGTAATAGGTGG
CTCCCTCACTAAACCCCTCAGTCACAGGGCACATAGTGTCATTGATGAAA
CCTGGGATTGGTTCCTTAGAGCATAAGGGCAGAGAGGCTGCGGGTAGAGC
CTGATGTCACCTCTTATGGGTCTACAGGATGTCAATGGGCCCCCAAGAGA
GCTGCGTCCCCGGCTCTGCCACTTGCGAAGGGGACCCCAGGGCTACGGGT
TCTATCTGCATAGTGACAAGTCCCGGCCTGGCCAGTACATCCGCTCTGTG
GACCCTGGCTCTCCTGCTTCTCACTCTGGCCTCCGTGCCCAGGATCGGCT
CATTGAGGTACCCTGGGTCCCCGTGTATCTGTATGTCCCTGAATGTCCAT
GTATGGGCCCTGGGTCCCTGCAGGAGGAGGGAAGACACAGGGAACTTGAG
CTGGCACTCTTCTTGCTTCTTTGGCTGCTGGTGGCTTCGATGAATATTTG
ATGGCACACCTGGCTGGGTGGCACTGGGCCGACTGGGCCCCTTAGGCCTT
TCTGACCCTGTGTGGATGGCGGCAGGTGAATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTATTGGGAGATTCCTCTTCGCAATCTCTCAACACCTCTCCAC
CGAATCACGGGCCAGAAATGTCTGACAGCCTCTGGAGGGCCGGCACCGGT
GGCACTTGTGCCCGGCTTCCCGCCCGCCCACTGCCTCCGAGTCCCTCCCC
CTCAGGTCCCGCAGCCTCGAGAAACCTCTCCTAGGTTTAGGCTTGCGTCG
CCGCCGTGCCGGTGCTCGGTGGCCAGCCCCCCTGCGCACCGTCCTCTGTC
CCTGGCTGTCGTCTTCGGTTCCCCGCTGTCTTTCNATGGCTCTGNNACGA
AAACCCCACCTTAATGTGTTTAGGGGGCGTCGGTTGCCTCCCCCCCAAAA
AAAAAAAACAGGTGCGGGGGGGGGGTGCCCCAATTTTAAATCTTTGTTCG
TTGTCCCCCCACTTTACCATCTTTTTTTTACTCTGAACCACTATTTTGAC
TTAAACAATTTATTTTTATTGTCTTAATCATTATATTATTACACTTATGT
TACATTATTTAATTAGATCAAAATCATCCCCACCCGCCCCAACATCTAAT
TTTTTATACCTATTTCATCCTCCCTACTTTTTTTCCCCACTTTTTATATC
TTTTATCCTTACATTTTTCTACTCCCCCCTTCCCTTTATTCCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_o17.b1 MSMg01no185_o17.b1 CHROMAT_FILE:
MSMg01no185_o17.b1 PHD_FILE: MSMg01no185_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:45 2005
         (533 letters)



>mm_chr17_24778737_24779669
          Length = 933

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacagctaaagctgtgtaataggtggctccctcactaaacccctcagtcacagggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ccacagctaaagctgtgtaataggtggctccctcactaaacccctcagtcacagggcaca 674

                                                                       
Query: 61  tagtgtcattgatgaaacctgggattggttccttagagcataagggcagagaggctgcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tagtgtcattgatgaaacctgggattggttccttagagcataagggcagagaggctgcgg 614

                                                                       
Query: 121 gtagagcctgatgtcacctcttatgggtctacaggatgtcaatgggcccccaagagagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gtagagcctgatgtcacctcttatgggtctacaggatgtcaatgggcccccaagagagct 554

                                                                       
Query: 181 gcgtccccggctctgccacttgcgaaggggaccccagggctacgggttctatctgcatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 553 gcgtccccggctctgccacttgcgaaggggaccccagggctacgggttcaacctgcatag 494

                                                                       
Query: 241 tgacaagtcccggcctggccagtacatccgctctgtggaccctggctctcctgcttctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgacaagtcccggcctggccagtacatccgctctgtggaccctggctctcctgcttctca 434

                                                                       
Query: 301 ctctggcctccgtgcccaggatcggctcattgaggtaccctgggtccccgtgtatctgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctctggcctccgtgcccaggatcggctcattgaggtaccctgggtccccgtgtatctgta 374

                                                                       
Query: 361 tgtccctgaatgtccatgtatgggccctgggtccctgcaggaggagggaagacacaggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgtccctgaatgtccatgtatgggccctgggtccctgcaggaggagggaagacacaggga 314

                                                                       
Query: 421 acttgagctggcactcttcttgcttctttggctgctggtggcttcgatgaatatttgatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 acttgagctggcactcttcttgcttctttggctgctggtggcttcgatgaatatttgatg 254

                                                                
Query: 481 gcacacctggctgggtggcactgggccgactgggccccttaggcctttctgac 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcacacctggctgggtggcactgggccgactgggccccttaggcctttctgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_o17.g1 MSMg01no185_o17.g1 CHROMAT_FILE:
MSMg01no185_o17.g1 PHD_FILE: MSMg01no185_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:45 2005
         (189 letters)



>mm_chr17_24625046_24625634
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcacgggccagaaatgtctgacagcctctggagggccggcaccggtggcacttgtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcacgggccagaaatgtctgacagcctctggagggccggcaccggtggcacttgtgcc 260

                                                                       
Query: 61  cggcttcccgcccgcccactgcctccgagtccctccccctcaggtcccgcagcctcgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggcttcccgcccgcccactgcctccgagtccctccccctcaggtcccgcagcctcgaga 320

                                                                       
Query: 121 aacctctcctaggtttaggcttgcgtcgccgccgtgccggtgctcggtggccagcccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacctctcctaggtttaggcttgcgtcgccgccgtgccggtgctcggtggccagcccccc 380

                    
Query: 181 tgcgcaccg 189
           |||||||||
Sbjct: 381 tgcgcaccg 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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