BAC Information

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BAC

Clone NameMSMg01-185P05
Chromosome17 (Build37)
Map Location 39,984,942 - 39,985,224
singlet/doubletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185P05.T7 (MSMg01no185_p05.b1)MSMg01-185P05.TJ (MSMg01no185_p05.g1)
ACCAG377782AG377783
length803744
length of high quality
(start - end)
313 (62 - 374)506 (93 - 598)
definitionCHROMAT_FILE: MSMg01no185_p05.b1 PHD_FILE: MSMg01no185_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:47 2005CHROMAT_FILE: MSMg01no185_p05.g1 PHD_FILE: MSMg01no185_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCTCGCCTTNNNNGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTT
GATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGG
ATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCC
CTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAA
AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAACGG
GAGACTGTGGAGGAGCGGCGGCGTGGCCCGCTCTCCCCGTCTTGTGTGTG
TCCTCGCCGGGAGGTGCGTGCGTCCTGTTTCCCGTCGCCCGCGTGTGGAG
CGAGTTGTCTGGAGTGATGCGACAGTTCCCCCCCCCTTTTACAAAAAACT
TTTTTCCCGACTTTGTCCCTTTTCTCTTTCTTCCGTTCCTTCTTCTTTTC
TTCCTTCTTTTTTCTATTCCTTTTTCTTATCGGCTTTTTTATCTCTTTTT
TTCTTTTCTTTTTACTCTCTAACGTTTTGTCCTGTTTTCCTTTCCTTTTT
CTTTGCTTTCTCTTTCGAACCTGTTCATTTTCCTCTTTTTTCTTTTCCTC
CCGCTTTCCTGTTTCCCTTCTCCCTTTTTTTTTTCCGCCCTCCCCCCCGT
TTTTCCCCCCCCATTACTCACTTTTTCTTTCTCTCCTCTTTGTTGTCTGC
TCTCTTCTTCTACTCTTACCTTCCACCTTTTTCCCACCTCTTTTTTCCCT
TTT
NNCCGGACCNNNNCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGTTCA
TGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGCTCAACGGG
TTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGT
AGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC
TCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGAC
GCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTC
GTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATG
CACCACCACCCACGGAATCGAGAAAGAGCTATCAACCTGTCAATCCTGTC
CGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCGCAG
GCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTT
GCAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGC
CCGGTGGGTCATGGTAATAACGCCGTCGCATCGTCAGTTGTTATCGTTTA
TGTTCGGATCTACCACGTCCTTTGATTGTCTTCCAAACTCTGACTTCCGT
TCTTGTCTTCTGATTTTTTCCCGTTTTAAGCTTTCCCTTGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_p05.b1 MSMg01no185_p05.b1 CHROMAT_FILE:
MSMg01no185_p05.b1 PHD_FILE: MSMg01no185_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:47 2005
         (313 letters)



>mm_chr17_39984739_39985451
          Length = 713

 Score =  453 bits (234), Expect = e-132
 Identities = 278/310 (89%), Gaps = 27/310 (8%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccagtaagtgcgggtcataagcttgcgttgattaagtccctgccctttgtaca 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccagtaagtgcgggccataagcttgcgttgattaagtccctgccctttgtaca 263

                                                                       
Query: 64  caccgcccgtcgctcctaccgattggatggtttagtgaggccctcggatcggccccgccg 123
           |||||||||||||| |||||||||||||||||||||||                      
Sbjct: 264 caccgcccgtcgctactaccgattggatggtttagtga---------------------- 301

                                                                       
Query: 124 gggtcggcccacggccctggcggagcgctgagaagacggtcgaacttgactatctagagg 183
                ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 302 -----ggcccacggccctggtggagcgctgagaagacggtcgaacttgactatctagagg 356

                                                                       
Query: 184 aagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggaga 416

                                                                       
Query: 244 ctgtggaggagcggcggcgtggcccgctctccccgtcttgtgtgtgtcctcgccgggagg 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctgtggaggagcggcggcgtggctcgctctccccgtcttgtgtgtgtcctcgccgggagg 476

                     
Query: 304 tgcgtgcgtc 313
            |||||||||
Sbjct: 477 cgcgtgcgtc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)