BAC Information

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BAC

Clone NameMSMg01-189C04
Chromosome17 (Build37)
Map Location 3,684,638 - 3,769,116
singlet/doubletdoublet
Overlap geneNox3
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik
Downstream gene4930470H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189C04.T7 (MSMg01no189_c04.b1)MSMg01-189C04.TJ (MSMg01no189_c04.g1)
ACCAG379925AG379926
length721711
length of high quality
(start - end)		323 (46 - 368)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no189_c04.b1 PHD_FILE: MSMg01no189_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:01 2005CHROMAT_FILE: MSMg01no189_c04.g1 PHD_FILE: MSMg01no189_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,768,799 - 3,769,116)(3,684,638 - 3,684,920)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGTTAGTACAGATACTAAAATACAAATAGTAAAGCATTATCTCC
CCTAATTATTCAATGATACACTAATACTTTAAGAAGGATCTGGCAGTAGT
GGNGAGAGAAGATGATTCTAATATAGAGACTCAACGTGGTGAAATTCAAT
ACTTAAATACTAACACTTGCATTAGGTGCTTTTCTTGTTGCTCTGAAAAG
AAGAAACTTTAAAAATGAAGGATTTTCAATGTTGCCTTTAGGAGAGGAAG
TCATGACAGAATTCCTGATGTCAGGGGCATGAGGATAGAACTCCTCTAGC
CTCATCTAGACAGATGAGGTTCAAGAGAGCCCGCATCACAGTTACTTGGA
AGGCTCCCTGGCTTCCTCTTTTCTACCTTTTGATTCATTCAGGATCCCAC
ACCAGGGGATCCTGGTACCCACATTAAGAATGGGATTTTCCTTCCTAAGT
TAAAACTCCCTAGAAATGCTCTCAGTGATAACCCCATAGCCTGCTTCATT
TATGGCCAAGGTATTTCTTAAACCAATCAAATTATTACNATTAATCATCA
TACTTACTAAGTCAAAAAAAAAGCCTCTAATTGTGTTCACAAGGAGACAC
ACTGAGGTAGAACCTTGCTAGAAACACTGAGTATCTGTCCTAGCTGATGG
CTTAATGAAAAATGGACATCT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTATTAATGGCCTTGAATTGT
AAGCCTTCCTGAGGAAATCAAGATTTTGACTTGGAAGAATGTCCTCATAA
CTAGAATCTGAATTTTCCTTCTCAAATAAACATGTGAACAAAACTATCAC
TTATAAAGAGGGCCTAGGTCACAGCAGCCCGAGAGAATCCTATTGATGGG
GTGTGTGGCCTTGAGACTTTTTTTTAGAAAATAGATTAAAAATATATAGT
CTCGATTCCAATATGGTAGTCCATGGAAGATATTTAGATGAACCAGTAAG
AGAGATGTATATATGTGGCTCACGGCACCTGTTTACCTCTAAGGATAGGA
TGCTGAGGCCTAGGGAAGTGTTTACCTCTAAGGATAGGATGCCGAGGCTG
ACTGTATTTTTTCTTCCCAGAGACACTGCTGTTCTGTGCACCTAGACATT
AGCAGTGATGGTGTCACGAGTCACATACTTGTCTTTCTGAAATGGCCATC
AGTCAGTGTATGGCTTGGCAAACCAGCTGCTCACACTTGTGCCAAGATAC
GAGGCACAGAGAACAGACCCAGAAAACAATTTGCAGGTTGAAAATGAAGC
ATTCAATCTGGGTTTGGGTGGTGCTTGCTTTATGAATCTCACATCAGTGA
AGGAAATTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_c04.b1 MSMg01no189_c04.b1 CHROMAT_FILE:
MSMg01no189_c04.b1 PHD_FILE: MSMg01no189_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:01 2005
         (323 letters)



>mm_chr17_3768595_3769316
          Length = 722

 Score =  571 bits (295), Expect = e-167
 Identities = 313/319 (98%), Gaps = 1/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggttagtacagatactaaaatacaaatagtaaagcattatctcccctaattat 64
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 522 gaattctggttagtgcagatactaaaatacaaatagtaaagctttatctcccctaattat 463

                                                                       
Query: 65  tcaatgatacactaatactttaagaaggatctggcagtagtggngagagaagatgattct 124
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 462 tcaatgatacactaatagtttaagaaggatctggcagtagtgg-gagagaagatgattct 404

                                                                       
Query: 125 aatatagagactcaacgtggtgaaattcaatacttaaatactaacacttgcattaggtgc 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 403 aatatagagactcaacgtggtgaaattcaatacttaaatactaatacttgcattaggtgc 344

                                                                       
Query: 185 ttttcttgttgctctgaaaagaagaaactttaaaaatgaaggattttcaatgttgccttt 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 343 ttttcttgttgctctgaaaagaagaaacttaaaaaatgaaggattttcaatgttgccttt 284

                                                                       
Query: 245 aggagaggaagtcatgacagaattcctgatgtcaggggcatgaggatagaactcctctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aggagaggaagtcatgacagaattcctgatgtcaggggcatgaggatagaactcctctag 224

                              
Query: 305 cctcatctagacagatgag 323
           |||||||||||||||||||
Sbjct: 223 cctcatctagacagatgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no189_c04.g1 MSMg01no189_c04.g1 CHROMAT_FILE:
MSMg01no189_c04.g1 PHD_FILE: MSMg01no189_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:02 2005
         (283 letters)



>mm_chr17_3684438_3685120
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttattaatggccttgaattgtaagccttcctgaggaaatcaagattttgacttggaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agtttattaatggccttgaattgtaagccttcccgaggaaatcaagattttgacttggaa 260

                                                                       
Query: 61  gaatgtcctcataactagaatctgaattttccttctcaaataaacatgtgaacaaaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgtcctcataactagaatctgaattttccttctcaaataaacatgtgaacaaaacta 320

                                                                       
Query: 121 tcacttataaagagggcctaggtcacagcagcccgagagaatcctattgatggggtgtgt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacttataaaaagggcctaggtcacagcagcccgagagaatcctattgatggggtgtgt 380

                                                                       
Query: 181 ggccttgagacttttttttagaaaatagattaaaaatatatagtctcgattccaatatgg 240
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ggccttgagatttttttttagaaaatagattaaaaatatatagtctcaattccaatatgg 440

                                                      
Query: 241 tagtccatggaagatatttagatgaaccagtaagagagatgta 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtccatggaagatatttagatgaaccagtaagagagatgta 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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