BAC Information

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BAC

Clone NameMSMg01-189F04
Chromosome17 (Build37)
Map Location 15,296,291 - 15,434,530
singlet/doubletdoublet
Overlap geneC330048F19
Upstream geneDact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
Downstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189F04.T7 (MSMg01no189_f04.b1)MSMg01-189F04.TJ (MSMg01no189_f04.g1)
ACCAG380046AG380047
length725737
length of high quality
(start - end)
321 (46 - 366)234 (143 - 376)
definitionCHROMAT_FILE: MSMg01no189_f04.b1 PHD_FILE: MSMg01no189_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:16 2005CHROMAT_FILE: MSMg01no189_f04.g1 PHD_FILE: MSMg01no189_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,296,291 - 15,296,603)(15,434,309 - 15,434,530)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAAGGGAAAGATTTTAAATGTTAGAGTTAATGGACAAAACATTT
ATGAGAACAATTTATGATCTTGGCCCAGGCCAAGATTTCTTATTTACATC
TCTAAAAGTGTAGTTCCTGAAACAAAATATTGGAAAACTGTGCTTTGTCA
AAATGTAAAGAGTAAAGAAAGAAGTAAGTTATAGATGGGTAGAGTACATT
TAAACATGCATATTCTTACGTCTAAAACCTAACTTATATGTATGCCAACA
GTAATAATCCCATAATATGTAAAGACTTGCTATCCTCCAGTGATAACTTC
TTTTTAAAAGGTGTTTTATTATTCCCTCCCTCCAAGATTATAATATATCA
TTTCCCCCTTCCCTCCTTCCAAATGCTCCTATACACCCATCCTAGCTATT
TTTCAAAATCCATTACTTCTTTTCTCATTCAATGCCATTATACATACATA
CATATATATGTATATGTGTATACACACACACACACACTCTCTTACACTCT
CATATATGTTATTATGATGGTTTGTATATGCTTGACCCAGGGAGTGGAAC
TATTACAAGGTGTGGCCTTGTTGGAGCAAGCGTGTTACTGTGGGTGTGGT
CTTTAATTCCCTCATCCTATCTGTCTGGAATCCAGTCTACTTCTATTAAG
CTTCATATGAATATTTTTATACTCT
NTTTTTTTTTTCTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGT
TTTACAGCCTCTTCAGCTTCAGTTCTCATCTGTATCTCCGCAGAGGGCTT
ATCACCTTTCCTCGCTGTCAGTCCCTCACACGGTTCCTGTTAAGCTCCCA
CAGTAGCTCCAAACCAAAGCAGTCTGGTTGCAAGAAGGAGCGCTAATGTG
CAAAGTGGGGCACAACCAGGGACACTCTTTTTGTGGGAGCAGACTCAGTG
GATTTAGGCTGAGGACAGCTGGTGCCAGGTCATTTGTGTGCTCTGGGACT
TAGCTATGCTTTGCAGGTGACTCCTTTTTTTCTTGCGCCCCGCCAAGGGC
ATTTTTTTTTTGCACAGACTCGAACTGTGTGTTGCCCAGAGAGGAACATT
TTATGAGTTGCCATTCTTGAAATTGGTACATATGAAACTCGGATAGACAG
TGATCATGGATGTTAGAACTATGAGAAACACAAGGTGAGACTAAAATTGG
AAAATGTTCATTTTAGTTGCTGGGTCAGAATTAGTACAAAAGGAAGAGGT
TGGAGAGAGGTGTTTGATGCCTGGAGGGTCAATTGCACTCAATCTGAGGA
AGGCACATAACCCTGGCTCAGACCTTGGGTAAACCATTGACTACTGCCTG
ACCCTGAGTAGTCTCTTAAAGATTTGGGTCTCATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_f04.b1 MSMg01no189_f04.b1 CHROMAT_FILE:
MSMg01no189_f04.b1 PHD_FILE: MSMg01no189_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:16 2005
         (321 letters)



>mm_chr17_15296083_15296803
          Length = 721

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcacaagggaaagattttaaatgttagagttaatggacaaaacatttatgagaacaattt 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcacaagggaaagattttaaatgttagagttaatggacaaaacatttatgagaacaattt 268

                                                                       
Query: 69  atgatcttggcccaggccaagatttcttatttacatctctaaaagtgtagttcctgaaac 128
           ||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 269 atgatcttggtttaggccaagatttcttagttacatctctaaaagtgtagttcctgaaac 328

                                                                       
Query: 129 aaaatattggaaaactgtgctttgtcaaaatgtaaagagtaaagaaagaagtaagttata 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaatattggaaaactgtgctttgtcaaaatgtaaagagtaaagaaagaagtaagttata 388

                                                                       
Query: 189 gatgggtagagtacatttaaacatgcatattcttacgtctaaaacctaacttatatgtat 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gatgggtagagtacatttaaacatgcatattcttacgtctaaaacctaacttatatgtat 448

                                                                       
Query: 249 gccaacagtaataatcccataatatgtaaagacttgctatcctccagtgataacttcttt 308
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 449 gccaacagtaataatcccataatatgtaaagacatgctatcctccagtgataacttcttt 508

                        
Query: 309 ttaaaaggtgttt 321
           |||||||||||||
Sbjct: 509 ttaaaaggtgttt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_f04.g1 MSMg01no189_f04.g1 CHROMAT_FILE:
MSMg01no189_f04.g1 PHD_FILE: MSMg01no189_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:17 2005
         (234 letters)



>mm_chr17_15434099_15434732
          Length = 634

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  cacctttcctcgctgtcagtccctcacacggttcctgttaagctcccacagtagctccaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cacctttcctcgctgtcagtccctcacacggttcctgttaagctcccacagtagctccaa 373

                                                                       
Query: 71  accaaagcagtctggttgcaagaaggagcgctaatgtgcaaagtggggcacaaccaggga 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 accaaagcagtctggttgcaagaaggagcgctaatgtgcaaagtggggcacaaccaggga 313

                                                                       
Query: 131 cactctttttgtgggagcagactcagtggatttaggctgaggacagctggtgccaggtca 190
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 312 cactctttttgtgggagcagactcagcagatttaggctgaggacagctggtgccaggtca 253

                                                     
Query: 191 tttgtgtgctctgggacttagctatgctttgcaggtgactcc 232
           ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 252 tttgtgtgctctggggcttagctatgctttgcaggtgactcc 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)