BAC Information

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BAC

Clone NameMSMg01-189H14
Chromosome17 (Build37)
Map Location 21,844,164 - 21,890,433
singlet/doubletdoublet
Overlap geneZfp760, BC043476
Upstream geneV1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
Downstream gene4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189H14.T7 (MSMg01no189_h14.b1)MSMg01-189H14.TJ (MSMg01no189_h14.g1)
ACCAG380148AG380149
length732754
length of high quality
(start - end)
316 (37 - 352)290 (85 - 374)
definitionCHROMAT_FILE: MSMg01no189_h14.b1 PHD_FILE: MSMg01no189_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:28 2005CHROMAT_FILE: MSMg01no189_h14.g1 PHD_FILE: MSMg01no189_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,844,164 - 21,844,363)(21,890,146 - 21,890,433)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGGTC
CTAGGCTCTTAGCAAAATTCTGACGACTGAATTTTGATACATCTATTTCT
TTTCAAAATCCACCCTTCTAAAATAATCTGTCTACAACTAACAATTTTTT
GGTTTTGGCTTGCCATTTTGTGTGTGTCCGTTGGGGATCGGACTCTGGCC
TTTGAATTTAACCTGTTATTGTTTGATGTATGTAGCCCACAGGCTGCTAG
TCAAGTCGAGACTATCTTGCATCTGAAAGGTTCCGAATCAAGGGTGTGGG
GCAGGTTCTGGGGTGCAGTGTCCTACTAGATCCAGTTCTGGTCAAGGATG
TTTGTGCTCACGGCGAGGCTGCGCAGAGAATGTGCAGAGCAGCCTGGCGT
CTGGAGCTGTGTGGAATGCATCCTGAGACGGAGTGGTAGGGACCGGTCTC
CACGGGGCGGGAAAACTGGTCTAGAAAAATAGAGCGAATAGAACACTAAA
GTCCGCATGGAAGGTCTGGAAAACTCAATTGGACAAGGGATTTGAACCAG
TGGGCTGGGTCAGAGAACCTACGTAACCGGAACCTATCTATAATATGCGG
ACCCAAAGGCGGCTCCAGTGTTCGTATGAGGTAGTGCGTTTGAAAACTCT
TCATTTCTCTGAGAGGTATATCTTTGTTTAAAGGTTGCTAGACCGTACCA
TACCCACATGTTAAAGTAAATGTGTAAAATTT
NNNATAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTAGGTTTTTTC
CTTTATAAGATAGATCCCGCCATATACCTTACAAATGCAGTCCGAAAGTG
TCCTTGTGGGAAGGATGGGGCAAAGATGCATATTGATATTGAAGCAGGAA
CTACATAAACATCCTGTATCCTTTCATATGAGTTCCTTGAATGTGCCCTG
ATTTTGCTATCTACCACACTTAATAAAACTAATATTCTGACACCACTGAA
TGCTGATTACATAGACGCTCTTTGATCTGTGCTGGCATTGTTCTACTGAC
AAGAATAATCAACTCACGCACCTTTTTTGCTCCCGTCCCCACCTTACTAA
AATGATCAAAGAGTAGTTTTCATTGTGTGTGTTTTACTGAAAGGTCACAA
AGCACCTTCGAGGCAGAAAGCAGAGGATATCTGTGAACTGAAGGCCAGCA
TAGGAAGTTCTAAGACATCTGAAATATATGGTGATACTGTCTCAAAATTT
AAAAATAAATAAAACCCCCAAACGAAAGTCATTTTTCAAAATGTTTTTAT
AGGGTAATTTCTATATAAATTTCAATGCTAAGCACTACTGAATTACATGA
AACTGTTGCTCAAAATCCTTGAGATTGATGTGAGAGTTTGCTCAGTGGCT
GTTGTGCAGGATGACAGTTTGATTCCCACCAACCAAATTTGGATTGTAAC
AGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_h14.b1 MSMg01no189_h14.b1 CHROMAT_FILE:
MSMg01no189_h14.b1 PHD_FILE: MSMg01no189_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:28 2005
         (316 letters)



>mm_chr17_21843850_21844565
          Length = 716

 Score =  364 bits (188), Expect = e-105
 Identities = 197/200 (98%)
 Strand = Plus / Plus

                                                                       
Query: 115 ggttttggcttgccattttgtgtgtgtccgttggggatcggactctggcctttgaattta 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 315 ggttttggcttgccattttgtgtgtgtccgttggggatcggactctggcctctgaattta 374

                                                                       
Query: 175 acctgttattgtttgatgtatgtagcccacaggctgctagtcaagtcgagactatcttgc 234
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 acctgctattgtttgatgtatgtagcccacaggctgctagtcaagtcgagactatcttgc 434

                                                                       
Query: 235 atctgaaaggttccgaatcaagggtgtggggcaggttctggggtgcagtgtcctactaga 294
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 435 atctgaaaggttccgaatcaagagtgtggggcaggttctggggtgcagtgtcctactaga 494

                               
Query: 295 tccagttctggtcaaggatg 314
           ||||||||||||||||||||
Sbjct: 495 tccagttctggtcaaggatg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_h14.g1 MSMg01no189_h14.g1 CHROMAT_FILE:
MSMg01no189_h14.g1 PHD_FILE: MSMg01no189_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:28 2005
         (290 letters)



>mm_chr17_21889946_21890635
          Length = 690

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctaggttttttcctttataagatagatcccgccatataccttacaaatgcagtccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agttctaggttttttcctttataagatagatcccgccatataccttacaaatgcagtccg 429

                                                                       
Query: 61  aaagtgtccttgtgggaaggatggggcaaagatgcatattgatattgaagcaggaactac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaagtgtccttgtgggaaggatggggcaaagatgcatattgatattgaagcaggaactac 369

                                                                       
Query: 121 ataaacatcctgtatcctttcatatgagttccttgaatgtgccctgattttgctatctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ataaacatcctgtatcctttcatatgagttccttgaatgtgccctgattttgctatctac 309

                                                                       
Query: 181 cacacttaataaaactaatattctgacaccactgaatgctgattacatagacgctctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cacacttaataaaactaatattctgacaccactgaatgctgattacatagacgctctttg 249

                                                           
Query: 241 atctgtgctggcattgttctactgacaagaataatcaactcacgcacc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atctgtgctggcattgttctactgacaagaataatcaactcacgcacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)