Query= MSMg01no189_p19.b1 MSMg01no189_p19.b1 CHROMAT_FILE:
MSMg01no189_p19.b1 PHD_FILE: MSMg01no189_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:05 2005
(321 letters)
>mm_chr17_44530419_44531139
Length = 721
Score = 580 bits (300), Expect = e-170
Identities = 304/306 (99%), Gaps = 2/306 (0%)
Strand = Plus / Plus
Query: 5 gaattcacctacctactcttctatcttgagctattttggtcactagcatgattatggtcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctacctactcttctatcttgagctattttggtcactagcatgattatggtcc 264
Query: 65 ccaattcccagttgctgtatttaccctgcatctggagtccataccatagtcaaaatctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaattcccagttgctgtatttaccctgcatctggagtccataccatagtcaaaatctct 324
Query: 125 gcagtagcttggcatactatgccatttgtatttggtgttctttcttccgtctcacagttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagtagcttggcatactatgccatttgtatttggtgttctttcttccgtctcacagttt 384
Query: 185 agctctggattttcaaacttagtaaccaaatgtcaccattaagaaatgagatttctctcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctctggattttcaaacttagtaaccaaatgtcaccattaagaaatgagatttctctcc 444
Query: 245 cttcatgaattgacatgccatctttattgaatctcttcttcttttgttttggnttttttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 cttcatgaattgacatgccatctttattgaatctcttcttcttttgttttg--ttttttt 502
Query: 305 tttttt 310
||||||
Sbjct: 503 tttttt 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_p19.g1 MSMg01no189_p19.g1 CHROMAT_FILE:
MSMg01no189_p19.g1 PHD_FILE: MSMg01no189_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:06 2005
(291 letters)
>mm_chr17_44634801_44635491
Length = 691
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%)
Strand = Plus / Minus
Query: 1 atctctggtcagacatgattcttaaccacacaaactaggttgctgagcatccggggccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 490 atctctggtcagacatgattcttaaccacacaaactaggttgctgagcatctggggccca 431
Query: 61 tgaacaatggatggaccttgatggatgctgatgtcaggacagatgagggatacagccttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgaacaatggatggaccttgatggatgctgatgtcaggacagatgagggatacagccttc 371
Query: 121 accatatttctgaaaaggacttctcggagggccaacccactgtcagacagagcagtctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 accatatttctgaaaaggacttctcggagggccaacccactgtcagacagagcagtctct 311
Query: 181 taggcagaaaggagatcttcctgtgtagtagtgatacaagctgtcttggtcactctcaca 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tagggagaaaggagatcttcctgtgtagtagtgatacaagctgtcttggtcactctcact 251
Query: 241 aaacgaccacagagggactccagctacctttgttgagtttgggatcacca 290
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaacgaccacatagggactccagctacctttgttgagtttgggatcacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
