BAC Information

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BAC

Clone NameMSMg01-190G03
Chromosome17 (Build37)
Map Location 61,796,133 - 61,796,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725
Downstream geneLOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190G03.T7 (MSMg01no190_g03.b1)MSMg01-190G03.TJ (MSMg01no190_g03.g1)
ACCAG380747AG380748
length742700
length of high quality
(start - end)
299 (444 - 742)241 (56 - 296)
definitionCHROMAT_FILE: MSMg01no190_g03.b1 PHD_FILE: MSMg01no190_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:37 2005CHROMAT_FILE: MSMg01no190_g03.g1 PHD_FILE: MSMg01no190_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCAGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCTCATACATCAGAGGATGGAGAATCTCTGCTAAT
TAAGGGAGTCGTCTATTACGTGACAAGCCCAAGCACGTTATCCAGTCAAT
GGTAGACTTCAACCTAAATTAGGAGAATTTTCCCACAGATCACTAGTAAA
ACACTGGAGAAATGTATCCTTTTATAATATGAAGAATACATGTTATCTAG
TTACAGGCTGAAGATGAGGCTCTTTTAGATGTATTGTCCTTTTTGAAATT
TTGACACCTAAATGTAAGCTTAACTTTTGAAAGTAGCAAAGACCAATGAG
GCAATAGGTCTATAAAGAGATATTTGTCCCTGCCCCCACACACAAGACTG
ATACTGAAGCAAAATTAAGATTGGTTTATTAAAGATTGTGAGGGCCAGAA
TGGTGTATGAAACAAAACCAGGATGATAGATATGGTGTTTACTATTGTGA
ACAACTGTTGGTTTTAAGTTATAGGAGCCTGCAGGGGAAAAAAAAAAGAA
CCCTTTCTTTTGAACAAATGCATCATTAATTTGATCATTTATAAGAAAGA
ACTTGGTAATTATAAATGCAACTTTTATTTACCTTATGTAATTGTCATCT
CTGAGGCTTATTGCCTCCTAAATCTATTCTAGGCCTAGTCCTAGTTGCTT
CTAGAGTCCATATAATTTAATCTAGACCTAGAAAAATTTCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATT
CCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTTCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGAGGTTCCTCAT
ATATTTGGACATAGTACTACCGGAGGATCCAGCATTACNCTCCGCTCGNA
TACANNANCAAGATGNCCCAANTGGTAAGAAGGACACATGCTCCACTAAG
AAAAAAAAAAACTTATTTATAATAGCCGGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCT
AGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCGAAN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_g03.b1 MSMg01no190_g03.b1 CHROMAT_FILE:
MSMg01no190_g03.b1 PHD_FILE: MSMg01no190_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:37 2005
         (299 letters)



>mm_chr17_61796064_61796763
          Length = 700

 Score =  524 bits (271), Expect = e-153
 Identities = 292/301 (97%), Gaps = 5/301 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   ccagaatggtgtatgaaacaaaaccaggatgatagatatggtgtttactattgtgaacaa 61
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 368 ccagaatggtgtatgaaacaaaaccagaatgatagatatggtgtttactattgtgaacaa 309

                                                                       
Query: 62  ctgttggttttaagttataggagcctgcagggg---aaaaaaaaaagaaccctttctttt 118
           |||||||||||||||||||||||||||||  ||   ||||||||||||||||||||||||
Sbjct: 308 ctgttggttttaagttataggagcctgca--ggaaaaaaaaaaaaagaaccctttctttt 251

                                                                       
Query: 119 gaacaaatgcatcattaatttgatcatttataagaaagaacttggtaattataaatgcaa 178
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 gaacaaatgcatcattaatttgatcgtttataagaaagaacttggtaattataaatgcaa 191

                                                                       
Query: 179 cttttatttaccttatgtaattgtcatctctgaggcttattgcctcctaaatctattcta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 190 cttttatttaccttatgtaattgtcatctctgaggcttattgcctcctaaaacttttcta 131

                                                                       
Query: 239 ggcctagtcctagttgcttctagagtccatataatttaatctagacctagaaaaatttca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ggcctagtcctagttgcttctagagtccatataatttaatctagacctagaaaaatttca 71

            
Query: 299 g 299
           |
Sbjct: 70  g 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space:   200390
Effective search space used:   200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)