Query= MSMg01no191_j21.b1 MSMg01no191_j21.b1 CHROMAT_FILE:
MSMg01no191_j21.b1 PHD_FILE: MSMg01no191_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:17 2005
(276 letters)
>mm_chr17_12189244_12189918
Length = 675
Score = 497 bits (257), Expect = e-145
Identities = 266/269 (98%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 5 gaattcatatttttctacttagtaagagctgagcttttgttagcactgagtttagttttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattcatatttttctacttagtaagagctgagcttttgttagcactgagtttagttttc 413
Query: 65 cctcacaattagcaaaccgagtgtggttacatgagacacagttatgcttaagtcaatggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cctcacaattagcaaaccgagtgtggttacatgagacacagttatgcttaagtcaatggt 353
Query: 125 gggcatctgagatccaagcaccagggcatacgtcactgaagaagtgggggctggggtggg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 352 gggcatctgagatccaagcaccagggcatacgtcactgaagaagtgggggctgggg-ggg 294
Query: 185 ggagagactgtaggagataaaacagatgaacctgccaggaaaccgacagtgcatttatca 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 293 ggagagactgtaggagataaaacagaagaacctgccaggaaaccgacagtgcatttatca 234
Query: 245 gaagcacccaacagaatgggctgttactg 273
|||||||||||||||| ||||||||||||
Sbjct: 233 gaagcacccaacagaacgggctgttactg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 675
Length adjustment: 9
Effective length of query: 267
Effective length of database: 666
Effective search space: 177822
Effective search space used: 177822
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no191_j21.g1 MSMg01no191_j21.g1 CHROMAT_FILE:
MSMg01no191_j21.g1 PHD_FILE: MSMg01no191_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:18 2005
(284 letters)
>mm_chr17_12033552_12034235
Length = 684
Score = 478 bits (247), Expect = e-139
Identities = 278/295 (94%), Gaps = 13/295 (4%)
Strand = Plus / Plus
Query: 1 ccataagaatcacgttaggctgggaaggtaagttctgttatgtagac-----c-tgctcg 54
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 188 ccataagaatcacgttaggctgggaaggtaagttctgttatgtagacatagacatgctcg 247
Query: 55 gtatatatcataggtggtggtgctcactgtcctagagaaaaataaaactaaagagagtga 114
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtatatatcataggtggcggtgctcactgtcctagagaaaaataaaactaaagagagtga 307
Query: 115 atgaccaagggaga-------ttcctcatagggtgatcagggaacagaggggtgtggatc 167
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atgaccaagggagagttcagattcctcatagggtgatcagggaacagaggggtgtggatc 367
Query: 168 ctggagagggattctgccttcctccgatgaaacagaaaggtgggggaaaagaagagaaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctggagagggattctgccttcctccgatgaaacagaaaggtgggggaaaagaagagaaaa 427
Query: 228 aagacatagaagattactcttccctttgggctttgggtgcttttggggatggtga 282
||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 428 aagacatagaagattacacacccctttgggctttgggtgcttttggggatggtga 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
