BAC Information

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BAC

Clone NameMSMg01-192G10
Chromosome17 (Build37)
Map Location 77,115,891 - 77,116,120
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043885, LOC100043886
Downstream geneEG624348, LOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192G10.T7 (MSMg01no192_g10.b1)MSMg01-192G10.TJ (MSMg01no192_g10.g1)
ACCAG382090AG382091
length1,2941,343
length of high quality
(start - end)
418 (43 - 460)230 (72 - 301)
definitionCHROMAT_FILE: MSMg01no192_g10.b1 PHD_FILE: MSMg01no192_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:42 2005CHROMAT_FILE: MSMg01no192_g10.g1 PHD_FILE: MSMg01no192_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCTCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATCCTGCAGGGAAGATCTTTAAGTCTAAAAAGGCTGTAAAGAGAGGT
GAACTATTCCATCTTGCAGACACACTCATTAATTAAGACTTGGGAAGTAA
ATAGCACTGAAGTTTCAGGAATTCCCTGAAATTGCCCCTCGTTCTCAAGA
GTAATATTCAACATAGACTGCTGAGTGATGCTTTGATACATGCTCTGCTA
TCCAGAAGTGGATCAGGCCAGCTCAGATGCCCAGTAAATAATAGTCTCTA
CCATTTTCAAATGAATTGATGTGGTACAGTGAGCTCTGGGCTTTCAGCTT
TTGTAATCTATCACCCATGTTGCATGGACCTTGGGTGACATACTTATCTT
TTATGCATTTCTCCTACTGTAAGCAAAACCTTAAATATACTCCTGTAATT
TTTTTTTTTCCCCCCCCCTNANCACATTGGACTTTTTAAAAATAAGGGAT
CTTGGTTTTCATTGGTTCATTATCTGGGGTAAATAGATATTTGTTCATGC
CTTCCCAGATATAGGCTCACATAACAACATGTAAACACACATGCATATAC
TTCTACAAGTACTCAATGCAGACAAGGTAAAAGTTATTCCTATACAAGAG
AACATTGAAGTACAAGGACATTTTATGATATACGTATGGTCTGATATTGA
GCTTAAACCCATGACATTACTTTTTTTCTGAGACCCCAGAAACCTCCTAC
ATATGTTGTGTCTATAAGATTATATTCTTTCAAGAACAGGAGACATTTTG
TCAAAGGACATATGTAATTCTCATTGAGATTCAAAGAAGAGTAGCTACTA
AGGATTTCTGTGAGTATTTATATCCTGACCAAAGCCCATTATGGACTTAC
TTATGTATATAAACATTTATGTTTCTGTATGGTTAAAAGTCAGGAAGATT
TGTCATTCTGAGTACCAGGGAAAATTTTCTCCCTATTCCCACAAGAATTG
CCCAAAATTATGTCCCCTGAAGCAAAAAACTTACCCTCCCAAAAAATTTC
TTTTAAGGGGGAAAAAATTTGGGTCAAAAAAGTTTCCCCTTAAAATTTTC
TCCCCCAATTAATCTACCAACGTCGGTATTTAACACTTTAGGAAAAAAAT
TTTTGTGGTCCTCCATTTAATTTCTTCCTGCGCCCTTAATAGTTTCTCTC
ATGCCTAAATATAAACACCGTTTTTCCTCTCCGATACCTGCTACTTTATA
TTTTNTCTCCTCTTCCTTCCACTATTCCTCATCATCTGATTCTT
NNNAAATGCAAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGCAACTGATGGATTAGGGGGAGGGAA
GGTCATTGCCTTCAGCTAGATAGCTTCTGAGATACCTATAAAGGTCTAGG
AAATATTTCCAGTTCTATGGATACAACAGTGTTCCTGATAAGGTCAGTGG
CCATCAAGAAGTAAGTAAAGTAAGAAATGAAAGCAACAACCGCAGCAATG
TTATGTATATGGGAAGAAGATATGTAGAGGAGAAGGGAGTAATTGGGGGG
CNTTATNGGATATATTATAAATCTGATTGCGGTTTAAAATATATGAATTT
GTCATAAATGATTGAATAAAGTTTTAAAATTTTTATTCTGGATCACTTAT
TTTTTTTTTTTTATCGTCACAAAAATGTTGATTTTGTTCCTGTGAAAAAT
CATTTTTTTTTTTCCCCCCCCCCCCNAAAGGGNNGTGCCTTCTAAAAAAA
AAGGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTCTTCTCTTT
TTTTTCTTTCTTCTGTTTTTTTTCTTTTCTCTTCTCCTTTCTTCTTTTTT
TTTCCTTCTTTTCTTTTCTTCCTTTTTCCTTTTTTTTTCTGCTTCTTTTT
CCCTTTTCTTTTTTTTCTCTTCCCTTTTTTCTTCTTTCTCTTTTCTTTTT
TTCCTTTTTTCTCCTTTTCTCTTTCTCCTTTTCTTCCTTCTTTTTTTTCT
CTTCCTGTCTTCTTTTTTCTTTTTTTTCTTTTCTTTTTCTCTTCTCCTTT
TTCTCTTCCTTTTTTCTTCCCTTTGCTTTTTTTTCCCTCCTTCTCTCCTC
TTTCTTTTTTTTTTCTTCCTTCTTTCTTTTTTTCTCTTTCTTTCTTTTTC
TTTTTCTTCTTTCCTTTTTTCCTTTCTTTTTTCCTTCTCTTTCCTTTCTC
TTTTTTCTCCTTTCTCCCTTTTTTCTCTTTTTGTTTCTGTTCTTTTTCTT
TCCTTTTTCCCTTTTTCTTTTCTTCTTTCTTTTCTTCTTTCCTTCTTTTC
CCTTTTCTTTCTCTCTTTTTTCTTCTTTCCTCCTTTCCCTCGCTGTTCTC
TTTTTCTCTTCTTTTCTTCTTTCTTTTCTTCTTTTCTTGTTCTCTTCTTC
TCTTTCTCTCTTCTTCTCCTTCCCTCTTTTCTTTTTCTCCTCTCTTCTTC
TTCTCTTCTTTTTCTCTCTTCTTTCTCCTTCCTTTTCCTTTTCCTTTCTT
CTTCTTTCTTTTCCTCTTTTTCTCTTTCTCTTTCCTCTTCCTTCTCTTTT
CTTCTCCTCTTTTTTCTCCTCTCTCTTCTCTCTCTCCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_g10.g1 MSMg01no192_g10.g1 CHROMAT_FILE:
MSMg01no192_g10.g1 PHD_FILE: MSMg01no192_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:42 2005
         (230 letters)



>mm_chr17_77115691_77116320
          Length = 630

 Score =  414 bits (214), Expect = e-120
 Identities = 226/230 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcaactgatggattagggggagggaaggtcattgccttcagctagatagcttctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggcaactgatggattagggggagggaaggtcattgccttcagctagatagcttctgag 260

                                                                       
Query: 61  atacctataaaggtctaggaaatatttccagttctatggatacaacagtgttcctgataa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 atacctataaaggtctaggaaatatttccagttctatggacacaacagtgttcctgataa 320

                                                                       
Query: 121 ggtcagtggccatcaagaagtaagtaaagtaagaaatgaaagcaacaaccgcagcaatgt 180
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 321 ggtcagtggccatcaagaagtaagtaaagtaaaaaatgaaagcaacaaccacagcaatgt 380

                                                             
Query: 181 tatgtatatgggaagaagatatgtagaggagaagggagtaattggggggc 230
           ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tatgtatatgggaagaagacatgtagaggagaagggagtaattggggggc 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)