BAC Information

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BAC

Clone NameMSMg01-192H20
Chromosome17 (Build37)
Map Location 61,928,591 - 61,929,254
singlet/doubletsinglet
Overlap geneLOC100043560
Upstream geneLOC433129, EG620725
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192H20.T7 (MSMg01no192_h20.b1)MSMg01-192H20.TJ (MSMg01no192_h20.g1)
ACCAG382150AG382151
length1,2891,262
length of high quality
(start - end)
669 (43 - 711)379 (70 - 448)
definitionCHROMAT_FILE: MSMg01no192_h20.b1 PHD_FILE: MSMg01no192_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:55 2005CHROMAT_FILE: MSMg01no192_h20.g1 PHD_FILE: MSMg01no192_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGTCACTGCGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGCTTAAAATAACTCCTGAAATGTGACATAACAAGTACCTGTACAAA
CTGAGATTCCTTTGGTAAGTGTGTATTGTTCAGAAGAACAGCCACTAGCC
ACTGTATTATTTGGATGACTGGAACTTGGAGTGATACAGTTTGGGGTAGA
CCTCTGGCTCTGTGTAAACCAGGTAACATTTTTTCATCTTTGAACTGCAG
CCTAAAATATAGTAGTACTTTCAATCATCTGTTAGTAGCTAATATCAAGC
AACTGTTAATAAATGGTATTGACATTTATTATAACTAGATTACTATACCT
TGAGCTTTTGAGAACACAACTCACACCACTTAGAGTTGCATCTTTTTTAT
ACAATTTTTAAGTAGAAAACAACTTTCCTACAAAACGTTTTGATTATGTG
TTTCCTCCCCCCCCTCCTTCCAGATCCTCCCTGTCTTCCTACACATCCTA
ATTTATGTTCTTTTTTCCCCTTTGTCTTTAAAACAGACAAACCAGGGCCC
TGATATTGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAGAA
GTGGATGCCCACAGTCAGCTATTGGATGGAACACAGGGCCACCAATGGAG
GAACTAGAGAAAGTACCCAAGGAGCTGAAGGGCTCTGCAACCCCATAGGT
GGAACAATAATACGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCT
GCATATGTAGCAGAAGATGGTCTAGTTGGCCATCATTTGGAAGAGAGGCC
CCTTGGTCTTGCAAACTTTATATGCCCCATTACTGGTTAACACCAGGTTT
TAGAATATGTTATTTAGTAGTTTAGTCTATTTCCTTCTCTTATATTTTAT
TTCATTTTATCTTTTTTTATTCTTTCTTTCTTTCTTTTTTTTTTTTCCAT
CTTCTTTTTTTACTTCCTTTTCCTTTTTTTTTTTTACTTACTGTTTTCCT
TTATTCCATTTTCCTTCTCTCCTCTCCTTCTTCCCTTTTCTCTTCTTCTT
TCTCTCTTTCCTTTCTTTCTTCTCCTCTTTTATTTGTTCACTTTTTTATT
TCTTCTCTTCTTTCTTTTCTATTNTGTTTTATACTTCTCTCTTTCTTTCT
TTTTTCTTTTNTCATCCTCTCTTTTTGCTTCTTTGTCTTTTCTATACTCC
TANTTCTATTATTTGTAATACTCTTTTCTCTTCTTCTGGTTATTTATCTA
TTTCTTGTCTTCTTTCTATTTCTCCTTCTTTATTTTTAC
NNTTAAATGTCGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATCAAACATATAAGTAATAACTAGACATAA
TTGTTTCTGTTTCAAATTTTGAAATCCAAATAACTGTTTTTAAAAATATA
TGTGAGCAGCTAACCAATATTTAGATTAATTTGAGGTCCATTACATGAGA
AGCAGCCCACACCCTATACTTCCTGGATGGTCTGAAACCAGAGACTAGAC
AGCCTGGAGACCAAGGGTAGGATCCAGCATGACTGGCAAAAAATAAATGG
ATACAATTAAGTTATAAATAAAATAATCAATTAAATTATACATAAATAGG
TAAATTGATAAATGGATAAATAAATTAAAAACGGAAATGATTCCTAATGA
TATTCTGCTATAGTTATGGTTGATGACTTATACAGATGTCATCAGAGTTA
TTTTTCCCCCCCCCCAGGAACATGTGCTCCCCCCCAAAAAAAAGGGTTAT
GCNGAGAGAAATTGAAGGTCTCTAATGGGTTCATTCCCTCAGAGCTTGAG
GACCCAGACAGAAGAGTGGGAGACAAGGCTGTAAGAGTCAGAGGAGATGG
AGGACACCAGGAGAAGATGGCTCACTAAATCATCTAAGAAGAGTCCATGG
GTTTACAGAGACTGAATAGGTATGTATGGGGCCTGCATGGGTATGTGCCA
GGTCCTCCTCATATGGCTGAAAGGTTGATGTTCCCTAGTCTCCACAATGA
AAATGGCTGAAACTCTGACTCTTTTAACTTTTTCTTCAAAATCTTTTCCC
TAAAATGGGTTGTCCTTTCCAGCCTAAATATGAAGGCCTTTTGCCCTGAC
TTACTGTTACCCTGCTTTTTCCTGGTTGGATTGCCTCTCCCTGTAACCTT
CCCTTTTTTCCTACTATCATTCAATACCTTTCGTTTCCTTTCTTCTCTCT
TTTATTCTTTCCTTCCTTTCCGATTTTTTCGTTTCTTTTCCTCTCTTCTC
TTTTCTTTTCTTCCTTCTCCTCTTCCCCCTCTTACCTCTTTCCCTTATCT
CGTTCCATTATTTTATACTATTCTATCTCCTTCCTCTCTCTTTCTCATCT
CTCTCTTTCTTATATTTTCTCTTCTCCTCACTATCTTACTATTCTTTCTT
TTCTCTTTCTCTTTTTTCGCTTCCTACCTCTCCCTCCTTCCATCCCTCCT
CTTCAACTCTTCATCCAGCTCTCACTCTTCTCTTTGTCCCTATACTTATC
TTTTCTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_h20.b1 MSMg01no192_h20.b1 CHROMAT_FILE:
MSMg01no192_h20.b1 PHD_FILE: MSMg01no192_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:55 2005
         (669 letters)



>mm_chr17_61928387_61929454
          Length = 1068

 Score = 1154 bits (597), Expect = 0.0
 Identities = 648/665 (97%), Gaps = 1/665 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgcttaaaataactcctgaaatgtgacataacaagtacctgtacaaactgaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgcttaaaataactcctgaaatgtgacataacaagtacctgtacaaactgaga 264

                                                                       
Query: 65  ttcctttggtaagtgtgtattgttcagaagaacagccactagccactgtattatttggat 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcatttggtaagtgtgtattgttcagaagaacagccactagccactgtattatttggat 324

                                                                       
Query: 125 gactggaacttggagtgatacagtttggggtagacctctggctctgtgtaaaccaggtaa 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 gactggaacttggagtgatacagtttggggtagacctctggttctgtgtaaaccaggtaa 384

                                                                       
Query: 185 cattttttcatctttgaactgcagcctaaaatatagtagtactttcaatcatctgttagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattttttcatctttgaactgcagcctaaaatatagtagtactttcaatcatctgttagt 444

                                                                       
Query: 245 agctaatatcaagcaactgttaataaatggtattgacatttattataactagattactat 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 agctaatatcaagcaactgttaataaatggtattgacatttattataactagattattat 504

                                                                       
Query: 305 accttgagcttttgagaacacaactcacaccacttagagttgcatcttttttatacaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 accttgagcttttgagaacacaactcacaccacttagagttgcatcttttttaaacaatt 564

                                                                       
Query: 365 tttaagtagaaaacaactttcctacaaaacgttttgattatgtgtttcctcccccccctc 424
           |||||||||||||||||||||||||||||| |||||||||||||| |||||||||   ||
Sbjct: 565 tttaagtagaaaacaactttcctacaaaacattttgattatgtgtctcctcccccaaatc 624

                                                                       
Query: 425 cttccagatcctccctgtcttcctacacatcctaatttatgttcttttttcccctttgtc 484
           || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 ct-ccagatcctccctgtcttcctacacatcctaatttaggttcttttttcccctttgtc 683

                                                                       
Query: 485 tttaaaacagacaaaccagggccctgatattgctgtctcttgtgaggctatgccagtgcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 684 tttaaaacagacaaaccagggccctgatattgctgtctcttgtgaggctattccagagcc 743

                                                                       
Query: 545 tggcaaacacagaagtggatgcccacagtcagctattggatggaacacagggccaccaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 744 tggcaaacacagaagtggatgcccacagtcagctattggatggaacacagggccatcaat 803

                                                                       
Query: 605 ggaggaactagagaaagtacccaaggagctgaagggctctgcaaccccataggtggaaca 664
           |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 804 ggaggagctagagaaagtacccaaggagctgaaggggtctgcaaccctataggtggaaca 863

                
Query: 665 ataat 669
           |||||
Sbjct: 864 ataat 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space:   697222
Effective search space used:   697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)