Query= MSMg01no195_a20.b1 MSMg01no195_a20.b1 CHROMAT_FILE:
MSMg01no195_a20.b1 PHD_FILE: MSMg01no195_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:08 2005
(324 letters)
>mm_chr17_66793514_66794235
Length = 722
Score = 503 bits (260), Expect = e-147
Identities = 296/310 (95%), Gaps = 5/310 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactctgtaccccaggctggcctcgaactcagaaatctgcctgcctctgcctcc 63
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 616 ggaattcactctgtagaccaggctggtctcgaactcagaaatctgcctgcctctgcctcc 557
Query: 64 caagtgctgggattaaaggcgtgtgccaccactgcccaggtaggggttgttgttttctta 123
||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 556 caagtgctgggattaaaggcgtgcaccaccactgcccagctaggg---gttgttttctta 500
Query: 124 aagagagattactgaggtttttgtttgtgggggagatgctgtggattgaagccttgtcct 183
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagagagatt--tgaggtttttgtttgtgggggagatgctgtggattgaagccttgtcct 442
Query: 184 gtgtgtgctaactgaagacgcgggcactgagaacaccctcagcccctgaagcttggggag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgctaactgaagacgcgggcactgagaacaccctcagcccctgaagcttggggag 382
Query: 244 atttttagtttcagtctgacatggtttgttccttttggcaggctggatgccaggtgctca 303
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 381 atttttagtttcagtctgacatggtttgttccatttggcaggctgggtgccaggtgctca 322
Query: 304 gcatggcctg 313
||| ||||||
Sbjct: 321 gcacggcctg 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 722
Length adjustment: 9
Effective length of query: 315
Effective length of database: 713
Effective search space: 224595
Effective search space used: 224595
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_a20.g1 MSMg01no195_a20.g1 CHROMAT_FILE:
MSMg01no195_a20.g1 PHD_FILE: MSMg01no195_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:08 2005
(609 letters)
>mm_chr17_66722288_66723299
Length = 1012
Score = 1110 bits (574), Expect = 0.0
Identities = 604/618 (97%), Gaps = 9/618 (1%)
Strand = Plus / Plus
Query: 1 actattcaaatggaagtatgatatatatat------acacacacatacatatacatatat 54
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 195 actattcaaatggaagtatgatatatatatatatacacacacacatacatatacatatat 254
Query: 55 atataattatatttgtgtgcctatgtgaattatgtgtacctgtgtatgaaggtgtctgca 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atataattatatttgtgtgcctatgtgaattatgtgtacctgtgtatgaaggtgtctgca 314
Query: 115 gaagccagaagaaggtgttatagtctttggaagtggcattatacttggttgagaggtgcc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaagccagaagaaggtgttatagtctttggaagtggcattatacttggttgagaggtgcc 374
Query: 175 caattgtgggtgctgggaaccaaactcagcccctctggaagagcagcaagtgctcttaac 234
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 375 caattgtgggtgctgggaaccaaactcaggccctctggaagagcagcaagtgctcttaac 434
Query: 235 tgctatggcatctctccagcctggtatgttttatgttt-atacagcatgactgggtattt 293
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 435 tgctatggcatctctccagcctggtatgttttatgttttatacagcatgactgggtattt 494
Query: 294 cctatgctgggcaccacccacatcattggggtcacagcaggaatctgcagctcgggtgtc 353
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 cctatgctgggcaccacccacagcattggggtcacagcaggaatctgcagctcgggtgtc 554
Query: 354 gtctataagcttgtttcagggatctgggtgctggcttcggaatctgaactctctctgagt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtctataagcttgtttcagggatctgggtgctggcttcggaatctgaactctctctgagt 614
Query: 414 ttcagtgtattagatactagtcaatatactgtattgttagaca--aaccattccaaccca 471
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 615 ttcagtgtattagatactagccaatatactgtattgttagacataaaccattccaaccca 674
Query: 472 gttcactgttaagaaaagcatatagcaagatatgctgggaactaaatacaaaattcattt 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 675 gttcactgttaagaaaagcatatagcaagatatgctgggaactaaatacaaaattcatct 734
Query: 532 atgttttatatgtaccttgcacccatagtctaaggttaattttataccgtgtttcgaatg 591
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 atgttttatatgtatcttgcacccatagtctaaggttaattttataccgtgtttcgaatg 794
Query: 592 attctgtgcatgatgcct 609
||||||||||||||||||
Sbjct: 795 attctgtgcatgatgcct 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1012
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1002
Effective search space: 600198
Effective search space used: 600198
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
