Query= MSMg01no197_i19.b1 MSMg01no197_i19.b1 CHROMAT_FILE:
MSMg01no197_i19.b1 PHD_FILE: MSMg01no197_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:29 2005
(310 letters)
>mm_chr17_86012566_86013275
Length = 710
Score = 485 bits (251), Expect = e-141
Identities = 266/275 (96%), Gaps = 8/275 (2%)
Strand = Plus / Minus
Query: 36 cacacacacacacacacacacacacacacaccagtgt----ccccgaacagggaagatct 91
|||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 547 cacacacacacacacacacacacacacacaccagggtaggg----gaacagggaagatct 492
Query: 92 tacctgcagaaaggtaagagaagccgggagcgtgtagcagcggcggataaatattcatta 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tacctgcagaaaggtaagagaagccgggagcgtgtagcagcggcggataaatattcatta 432
Query: 152 ggaagtgtaagtcctttcaaagggctccgcgcgcgcgctctagctcctgtctctctttct 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggaagtgtaagtcctttcaaagggctccgcgcgcgcgctctagctcctgtctctctttct 372
Query: 212 ctccctccctctgtcctccaggaaggcttcccctcctctagctatctcaacgcccccccc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctccctccctctgtcctccaggaaggcttcccctcctctagctatctcaacgcccccccc 312
Query: 272 cccttcctgcgaaataccgggtggatcctaggcta 306
|||||||||||||||||||||||||||||||||||
Sbjct: 311 cccttcctgcgaaataccgggtggatcctaggcta 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_i19.g1 MSMg01no197_i19.g1 CHROMAT_FILE:
MSMg01no197_i19.g1 PHD_FILE: MSMg01no197_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:29 2005
(292 letters)
>mm_chr17_85855727_85856418
Length = 692
Score = 540 bits (279), Expect = e-158
Identities = 288/291 (98%)
Strand = Plus / Plus
Query: 1 ctcatgatgatgattcttagactagagagtgaggaacactgtggtgacaggctcttcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatgatgatgattcttagactagagagtgaggaacactgtggtgacaggctcttcaag 260
Query: 61 ccccgttctaagtagaccactagtcagtttgtgagcagacatctaagaaagcaaatgggc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccgttctaagtagaccactagccagtttgtgagcagacatctaagaaagcaaatgggc 320
Query: 121 accaccctacttcctgttcttgggaaaggaggctgcgcgcccttaatccatgcgctctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaccctacttcctgttcttgggaaaggaggctgcgcgcccttaatccatgcgctctag 380
Query: 181 aggcagaggcgggcaggtccacagagttaggtgcaggactgctagtcctatacagaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcagaggcgggcaggtccacagagttaggtgcaggactgctagtcctatacagaggaa 440
Query: 241 ccctgtctcaaaaataaataagcaaataaataaataaataaataaataaat 291
|||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 441 ccctgtctcaaaaataaataagcaaataaacaaataaataaataaacaaat 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
