BAC Information

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BAC

Clone NameMSMg01-197O08
Chromosome17 (Build37)
Map Location 23,322,168 - 23,322,794
singlet/doubletsinglet
Overlap geneZfp40
Upstream geneLOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248
Downstream geneLOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197O08.T7 (MSMg01no197_o08.b1)MSMg01-197O08.TJ (MSMg01no197_o08.g1)
ACCAG385443AG385444
length1,269713
length of high quality
(start - end)		---627 (77 - 703)
definitionCHROMAT_FILE: MSMg01no197_o08.b1 PHD_FILE: MSMg01no197_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:56 2005CHROMAT_FILE: MSMg01no197_o08.g1 PHD_FILE: MSMg01no197_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCAATAGGCTATTATGTAAAAAGGAACAAAAACAGAGGGCATCCCAA
CCACGAAAAAAAGCAACAGATCGGAGGGGGAGGGGCGTGTGTTGTGGGAG
CAGATATATATATTCGTGACCGCCGAGTGCCGGCGCGAGCGCCGAAGTTT
GTGCACGGCTGCGTTTCCACAATGCCGCCGAGTAGGGAGGGTGTAAGGCG
CCGCGTACGTGTCCGCGTGGGCGCACAAGACCGCGTCGCGGCGCAATGGT
GTATATGTTTTCTGTTTACCCCCGTTATTTCGCGCGCCGCAGAAGCATAC
GAATGCGGGTTCCCCGGCGTTTTAGCCGAAACACACACAGGGCGNGAGCC
AAGACAGTACAGAATTAGTCCGTTCATCGGCCCACCAAGATCCTCCCCGT
ATGTTGTGCACCACTAGGTCCGGGTCTTCCGCAGTAGGGATGTAGCAATA
GTTTAGGTAGTTAGGTGGAGACCACGACACAAGTGCAGCTAATCCTACAA
CAGGGTAAAGTCTTTACCCAACCGCCTGCTATATAACTATATGACGCCCC
GATACCCTCCCTTTTCCCTCGCCCCTCTTCCCCGCACCACTGTTCGAATT
ATTTAGATTTATATACTCAGTTGTATGGCGCGAATATAATATTATTTAGT
GCCACACGTGTTTTGTTTCTTCTTACCATCCGAATGACTGGTGTCCTATT
GCGGAGCACCCCATTCTGTGGTATGTTCAATTCCCGTTTTATGACCATCA
ATATGGTTTTTCTTGNGTTAATCTATGCATCCCCACCGGATCTGAGACAG
ACGCTGCGGTGTTCATCCACTACCACACCTTAATCGCCCGTTTGTTTATT
GCTCCCCCCCACAATAGTACGCCCTGCAGTACCTCAGTGAGCACGCTCAG
TGTATATTTACGCCCGCCTGTGCCGCTCCGAGTAAGCCGACGCCCGCCGC
CTAGGCGGACGCTCAGATCGTAAAGTTTAGCAGCACCCTGCAACTGTCCC
GCCCCGCCCCTTTGTCCCTGTCGCCATCTATTATATATCCCTCCCCCTCC
GTCCGTGCGCTGTGTACAGTTTGTTTCTTGCTCACTTACCAAATTATGTT
CGCTTTTTATATTATTTTTTCGACACGTGTCGCCACATATACGAGTGTTG
CAACTCATTCTATTGGTCCCACTTATAACGCGCCATGATCTTACGTCTGC
GGATATTTTTGATACGGCTGCCTCTACGCCACGACTTCTGTTTATTTATT
ACGCTCACCCGACTCGTCN

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTATTTTTAAAGTAACAAAGTGG
AAAGGACCGGATGAGCAGCAACAAAAAAGGTATGTTTCCTCTCTCAATAG
AAGGTGTTTGTTTATATGAGGCCAGTGGAATTCACAGCAGCATCATGCAA
TTCATCAGCAGTCTAGAGATGAAGGTGAAATCCAGCAAGATCAAAAGCTC
CGGTAAAGTTACCACATGCAGCCAACTCTCATCAGAGAAAAACATGCAGG
ACCTACAGGTTCTTTTGATGTTCAATTGGAAACCACTGCCCTGCAGTGAG
TCTGATAGTGAGAATGTCACTCAATGTGTTTGGCTTTAATGCCCTTCACT
TATGAACAGCACAGGACACCTATGTGTGACTTAGGACACAATTAACACAG
TCCTTAATATCCAAATCCTATTTAGTAATCATGAACTATTTAGAATGGGA
ACATGCCAATTCTATGTCACACCTCAGTAAGGAGGTTTTGAGATCTGGGG
CTGGTCATTACATGACAGAATAAGAAAACTGTGGTGCTTGACGCAACTCA
CTTTCCTTCCATAGTAGGCTTCTCTGTAGATGGATCATAGCATTTTCCTG
TAGTAGAAAATCTTGCACAATTAGGGAGGATCCTCTCAAAAATTTCTACC
GTGTTCCTAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_o08.g1 MSMg01no197_o08.g1 CHROMAT_FILE:
MSMg01no197_o08.g1 PHD_FILE: MSMg01no197_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:56 2005
         (627 letters)



>mm_chr17_23321968_23322994
          Length = 1027

 Score = 1166 bits (603), Expect = 0.0
 Identities = 621/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatttttaaagtaacaaagtggaaaggaccggatgagcagcaacaaaaaaggtatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 attatttttaaagtaacaaagtggaaaggaccggatgagcagcaataaaaaaggtatgtt 260

                                                                       
Query: 61  tcctctctcaatagaaggtgtttgtttatatgaggccagtggaattcacagcagcatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctctctcaatagaaggtgtttgtttatatgaggccagtggaattcacagcagcatcat 320

                                                                       
Query: 121 gcaattcatcagcagtctagagatgaaggtgaaatccagcaagatcaaaagctccggtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaattcatcagcagtctagagatgaaggtgaaatccagcaagatcaaaagctccggtaa 380

                                                                       
Query: 181 agttaccacatgcagccaactctcatcagagaaaaacatgcaggacctacaggttctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttaccacatgcagccaactctcatcagagaaaaacatgcaggacctacaggttctttt 440

                                                                       
Query: 241 gatgttcaattggaaaccactgccctgcagtgagtctgatagtgagaatgtcactcaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgttcaattggaaaccactgccctgcagtgagtctgatagtgagaatgtcactcaatg 500

                                                                       
Query: 301 tgtttggctttaatgcccttcacttatgaacagcacaggacacctatgtgtgacttagga 360
           |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||
Sbjct: 501 tgtttggctttaatgcccttcacttatgaacagcacaggagagttatgtgtgacttagga 560

                                                                       
Query: 361 cacaattaacacagtccttaatatccaaatcctatttagtaatcatgaactatttagaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaattaacacagtccttaatatccaaatcctatttagtaatcatgaactatttagaat 620

                                                                       
Query: 421 gggaacatgccaattctatgtcacacctcagtaaggaggttttgagatctggggctggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 gggaacatgccaattctatgtcacacctcagtaaggaggttttgagatccggggctggtc 680

                                                                       
Query: 481 attacatgacagaataagaaaactgtggtgcttgacgcaactcactttccttccatagta 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 attacatgacagaataagaaaactgtggtgcttgacgcaattcactttccttccatagta 740

                                                                       
Query: 541 ggcttctctgtagatggatcatagcattttcctgtagtagaaaatcttgcacaattaggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcttctctgtagatggatcatagcattttcctgtagtagaaaatcttgcacaattaggg 800

                                      
Query: 601 aggatcctctcaaaaatttctaccgtg 627
           |||||||||||||||||||||||||||
Sbjct: 801 aggatcctctcaaaaatttctaccgtg 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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