BAC Information

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BAC

Clone NameMSMg01-198A12
Chromosome17 (Build37)
Map Location 17,436,001 - 17,436,304
singlet/doubletsinglet
Overlap geneEG626854
Upstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238
Downstream geneLOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198A12.T7 (MSMg01no198_a12.b1)MSMg01-198A12.TJ (MSMg01no198_a12.g1)
ACCAG385524AG385525
length724753
length of high quality
(start - end)
330 (19 - 348)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no198_a12.b1 PHD_FILE: MSMg01no198_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:07 2005CHROMAT_FILE: MSMg01no198_a12.g1 PHD_FILE: MSMg01no198_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCACTATTCGGAGAGGATCCGCGGAATTCAGGCAAATTCCAAAAAACTA
TCTTCAGTGATCCTTACAAACAAGCCTAATTTATTCTCATCATTCTTCCT
CCTTCTCAAATGAAAGTGTAGATGTACATCAATAACAACAAGAAAAACAA
GCAACCACACATACAACCACACAACTAAAATACAGTTGCCCCCTCTTTCA
AAAAGAGAAACAACATTCACCATCTTACCTATGGCAGTGAGGTTCTTATA
GGTTTCGAGCATCACATCTTTGTAGAGACTCTTCTGGGAAGGATCCAGCA
AAGCCCATTCTTCCTGAGTAAAGCTCACCAGTACATCATTGTACGTCACT
GCACTCTAAAACATACCATATATATGTACAAAAGTAGCATGAGAATGAAA
TATTAGACATGTACATTTCATTGACAATATTTTCAAATAATGTTGGTAGT
TCGCCCACCTTGTTTCCTGACACAGAAGTTATAATGTACTCATGATCACC
AAGTCATTTTTGAAGGAAACCGAATAATGAGTTCTGATCTGTCATTTCTT
CACCCTTTGAGTTGGAGAAAGTCTTGGAAGACAAAAGCCAATGAATACAC
ATAAAGAGATAAGCAAAAAGATCAATAGTAGTAAAGCACACCGAGATATT
GCATGAAATATTCTCATTACAAAAGTAATGAACAAGATGCTTAGATTCGC
GAAAGCATTTAATTACAGCACTGG
TCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCAACATGTAAGTGCTTGACAA
ATTTCTGTGTCTGTGCCTAGTAGGAATTTTACTATTCCAATTTTACAGTG
TGCATTGGGAGAGAAATGTATGAGTAATACCTGGTTTGTCTAATACTTGG
ATAACTTTTCAATCATAAAGCCAATTTCAGCTTTTAAAAATAAATTTTGA
TATTATAATTAAATCCTTTAGGTTTATCCTTTCTCACTGTTGTTAAGTCT
TATGGCCCAGCACAAATGGCTTAGGTGCCTATTTAACAAATCAAAGCAGG
CCAGAATGTCAGTTTCTCTCTTATTCCCACGCCCCCCTTTACAGTGTATG
CCTAACAAAGCACACCCTGGATCTTAGGGATTGAAAAATACATCTCCCTG
CTCCCCTTCCTTATGTAATCCACCCAAATTTGTTAGAATATCTTTTTCAT
CTATCATTTACCCACCTCATCACTTTGTCTGGTTTTCCTCTCCTCTCCTT
CCTCTCTTCACATGGCTTTGGTTCCACTTGATTCTGGTCACTCTCTAAGA
TGTGCCTGTCTCTAACTCCACTCTCCCATGTATCAGCAATAAACTTTCTG
TTCCACCATGTCTAGGAACAGCCATGTTCCTTTCCTTTTTATTCCCTTTT
TCTGCCACCTCCCATTAACCACTGCTTGCTTTCACATTTATGGCCACATC
TAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_a12.g1 MSMg01no198_a12.g1 CHROMAT_FILE:
MSMg01no198_a12.g1 PHD_FILE: MSMg01no198_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:07 2005
         (291 letters)



>mm_chr17_17435801_17436491
          Length = 691

 Score =  462 bits (239), Expect = e-135
 Identities = 282/305 (92%), Gaps = 15/305 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccaacatgtaagtgcttgacaaatttctgtgtctgtgcctagtaggaattttactatt 60
           |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 aaccaacacgaaagtgcttgacaaatttctgtttctgtgcctagtaggaattttactatt 260

                                                                       
Query: 61  ccaattttacagtgtgcattgggagagaaatgtatgagtaatacctggtt---------- 110
           |||||||||||||||| |||||||||||||||||||||||||||||||||          
Sbjct: 261 ccaattttacagtgtgtattgggagagaaatgtatgagtaatacctggtttgttttagta 320

                                                                       
Query: 111 ----tgtctaatacttggataacttttcaatcataaagccaatttcagcttttaaaaata 166
               ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 321 catatgtctaatatttggataacttttcaatcataaagcctatttcaacttttaaaaata 380

                                                                       
Query: 167 aattttgatattataattaaatcctttaggtttatcctttctcactgttgttaagtctta 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattttgatattataattaaatcctttaggtttatcctttctcactgttgttaagtctta 440

                                                                       
Query: 227 tggcccagcacaaatggcttaggtgcctatttaacaaatcaaagcaggccagaatgtcag 286
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 441 tggcccagcacaaatggcttaggtgcctaat-aacaaatcaaagcaggccagaatgtcag 499

                
Query: 287 tttct 291
           |||||
Sbjct: 500 tttct 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)