BAC Information

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BAC

Clone NameMSMg01-198C02
Chromosome17 (Build37)
Map Location 88,573,916 - 88,574,207
singlet/doubletsinglet
Overlap genenone
Upstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198C02.T7 (MSMg01no198_c02.b1)MSMg01-198C02.TJ (MSMg01no198_c02.g1)
ACCAG385583AG385584
length727763
length of high quality
(start - end)
294 (33 - 326)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no198_c02.b1 PHD_FILE: MSMg01no198_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:15 2005CHROMAT_FILE: MSMg01no198_c02.g1 PHD_FILE: MSMg01no198_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGATCCGCGGAATTCTTCAGCTCTCCTAGATCCTGGAGCCCTGAAGCT
GCGAGACTCCAAAGCCTTGTGCCAGTCACAGACGACCCACTTTAAGAGCT
TTCTGAGGCAGCCTCCTGGGCTTGGCAAACACTGTGACTTGGTGTGATCT
TGGCAGGGTGGAGCACTACTTTCATTCTGCCCTTAGAAATTTGGTTAGCA
AGAGGTTGGGGAGGCACTTGGGGTCTGGACGACCGGCTGATTGAGGAGAG
AGGTCGGTGAACACAGAATGTCACTAGAGTCCTTTGCACTCACTGGAGCC
CCATCAGACAGTAGATGCACACTGTTTTTACCTTCCCCCCCCCAGCTCTT
TGCATCTGTGATCTGAGTCCAAAAGGCTCCAACTTTACCCACTCCCTCCT
AGTCTTTTTACTCCTCTATAGGAAAGTCATGTTCTTTTGTTTACCCCCAG
CAATGATGTCTCTCCCCTACAGAGAACATATGTGTTGACTAAACACAAGC
ATCCCGCAATTCAAGCCTCTACAATTATAAAAACGGCTGCCTTTTAACGG
AACAGAACATCACAAACGTATTTTTCATCCTCAAAACAGCTAAAATTGCT
TCACCTTCTCTTACCTCCGTACCAACCCCGCCGCTAATAGAAATTCTCTC
GGTATCCCACCCCTAACAAGTTTAGGGGTATAAAATGGTCTTAATTAATC
TAACACGAGGCCATTTCCCTCCCCCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAAGCAGGGCTACACAGGGA
AGATTTAACTCAAAATCAAACAAACTGACATAGAAAGAATGCAAGAGCCT
AAGGATGGGGGAAGAGTCGTGCAAAATGCCATGTTCTAGACACAGAATTG
CAGACACGAACTCAGAGGCTGACAGCTATGGCTACCCAAGGCCTGCACAA
GATGGGGCCATCAATCTTCTATCATGACGGGGAGACTTATAAGGCCTTAC
CCCTCCTGGACCAGGAGCTTTTGGCATGATCAGTTGCTGGGGAAGGCAGC
CTTGTTCACAGTGCTGTTTATTGTGTTCCGTTCANACCCCATGGGTGGGT
GAGATGGCTCCACGGGTAATGACAGTTGCCAACAAACAAGACACCCTGGA
TTTGATCTCTAGGACCTGATAGGTTTTCTTCACTGATAAATACAAGCCAA
TTCGGCCGGCCGGTGGTGGCGCATGTCTTTAATCCCCGTACTTGGGAGGC
AGAGGCAGGTGGATTTCTGAGTTCGAGGTCTGCCTGGTCTACTCAGTGAG
TTCTAGGACAGTCAGGGCTATAAAGACAAACCCTGTCTGGAAAAAAATAA
TCCCATTCAAAACAAACCTCGAATAATCGGGCTTGCCGATCCAAATAGTA
AGGTCGGTAACCTTTCGTCCCTATTCCCTTTTTCGTCCTTTGATTCCACA
AACCTGTGTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_c02.b1 MSMg01no198_c02.b1 CHROMAT_FILE:
MSMg01no198_c02.b1 PHD_FILE: MSMg01no198_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:15 2005
         (294 letters)



>mm_chr17_88573716_88574409
          Length = 694

 Score =  528 bits (273), Expect = e-154
 Identities = 288/293 (98%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctggagccctgaagctgcgagactccaaagccttgtgccagtcacagacgacccactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tcctggagccctgaagctgcgagactccaaagccttgtgccagtcacagacgatccactt 260

                                                                       
Query: 61  taagagctttctgaggcagcctcctgggcttggcaaacactgtgacttggtgtgatcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagagctttctgaggcagcctcctgggcttggcaaacactgtgacttggtgtgatcttg 320

                                                                       
Query: 121 gcagggtggagcactactttcattctgcccttagaaatttggttagcaagaggttgggga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 321 gcagggtggagcactactttcattctgcccttagaaatttggttagcaaggggttggggg 380

                                                                       
Query: 181 ggcacttgggg-tctggacgaccggctgattgaggagagaggtcggtgaacacagaatgt 239
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcacttggggat-tggacgaccggctgattgaggagagaggtcggtgaacacagaatgt 439

                                                                
Query: 240 cactagagtcctttgcactcactggagccccatcagacagtagatgcacactg 292
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cactagagtcctttgcactcactggagccccatcagacagtagatgcacactg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)