BAC Information

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BAC

Clone NameMSMg01-199J16
Chromosome17 (Build37)
Map Location 90,652,847 - 90,653,324
singlet/doubletsinglet
Overlap geneNrxn1
Upstream geneLOC100043904, LOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199J16.T7 (MSMg01no199_j16.b1)MSMg01-199J16.TJ (MSMg01no199_j16.g1)
ACCAG386478AG386479
length768738
length of high quality
(start - end)
374 (41 - 414)478 (89 - 566)
definitionCHROMAT_FILE: MSMg01no199_j16.b1 PHD_FILE: MSMg01no199_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:13 2005CHROMAT_FILE: MSMg01no199_j16.g1 PHD_FILE: MSMg01no199_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTCTGAATTACAGCTGTGCTTCTGTCCATTGGTTGGGTGCAAATATC
TGCATCTGACTCTTTCAGCTGCTTGTTGGGTGTTCTGGAGTGCGGTCATG
CTAAGTCCTTTTTTAATGAGTGCTCCATAGCCTCAGTAATAGTGCCAAGT
CTTGCGACCTCCCCTTGAGCTGGATCCCACTTTGGGTCTGTCACTGTTGG
ACCTTCTTTTCTGCAGGATTTTCTCCATTTCCATCCCTGTAAGTCTTTCA
GACAGAAACAATTATGGTTCATTTACTGAAGCTACTTTCTTTTTTCCATT
GTATATTTTTAGCTTCTTTGCCAAAGATCAAGTGTTTGTAAGTATGTGGT
TTTATTTCTGCCCCCTCACGTCTATTCTATTGATCTACGTGTCTGTCCCT
ATACCATTGCCATGCAGGCTTTATCTCCGTTGCTCCCTATTACATCTTGA
GGTCTTGTAGGTTGATGCCCTCAATCATTCTATTATCGATTAGACCTCTT
GCTCCTGATTACGTCTCTTTGCTCCTGCTGAATGATACCCTGTTCTACTC
TTAAACTTTAAATCCATTTCTTACATTTTTCCATTTATTCAATTCTTCGC
GCCCTACTTACTCTTTACCTAACTACCTTCGTCGCTTACATATTTTTATC
TTACATTCCCCGCGTTACATTTTTTTTTCCCTTCCAATCTGCCTTTCTGC
TTAACGACATTCCTTGCA
CGTCAAAANNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTTCATCA
TTTCATCTGGAAAACAGCTGCCAGATTTGTTTCCCAGTAAGAGGAAATTA
CGAAGGCAGCATCCTGGGCAAACATGTTAAGCGCTCACCGTATTGCCCAG
TATGGTGGAGCTTTCCCATCAAAGTCAGTTATTTCCCTTGCTCAGCCATG
CCTGACTCCAGGAAAGGAAATCTATGAGATTAGTGTTTCTAGACCACCAC
ATGCAGAGATGGAAAGAGGGAGAGACAAGAAGTCCCAGTGGCTTTGTGTT
CCCCACTACCCAGCTTCTTTGAGTTCCAGATGCATACATTAGGAAGCATT
AGCCAGAATAACTTCTTCTGTGAAGGCACCACAACACAGGAGATAGCAAG
AACATGTGAGTGCAAGGCTGTGCGGACCACAACATGGTTTAGCAAGGACA
GGCAGAGCTTACACTGCAAATGTTTACACAGATATCTATAGCAATGCAGT
TCAGAGAGATAGGATGCCTTGCCTTGTCGGATAAAGAAAACAGGGTGAAG
GGTAGCCAGAGAATGCAAATAATCTCTTTCTAATTGCTAGGCGCTATCTG
CTGTTTAAACAGGAGGAACATAGATTGCTTGAAACCCAAGATCCCGAAGA
AAGAAACTATTATTAAAATACCTTAAGCTATCACCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_j16.g1 MSMg01no199_j16.g1 CHROMAT_FILE:
MSMg01no199_j16.g1 PHD_FILE: MSMg01no199_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:13 2005
         (478 letters)



>mm_chr17_90652647_90653524
          Length = 878

 Score =  901 bits (466), Expect = 0.0
 Identities = 475/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccttcatcatttcatctggaaaacagctgccagatttgtttcccagtaagaggaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccttcatcatttcatctggaaaacagctgccagatttgtttcccagtaagaggaaat 260

                                                                       
Query: 61  tacgaaggcagcatcctgggcaaacatgttaagcgctcaccgtattgcccagtatggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacgaaggcagcatcctgggcaaacatgttaagcgctcaccgtattgcccagtatggtgg 320

                                                                       
Query: 121 agctttcccatcaaagtcagttatttcccttgctcagccatgcctgactccaggaaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctttcccatcaaagtcagttatttcccttgctcagccatgcctgactccaggaaagga 380

                                                                       
Query: 181 aatctatgagattagtgtttctagaccaccacatgcagagatggaaagagggagagacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctatgagattagtgtttctagaccaccacatgcagagatggaaagagggagagacaa 440

                                                                       
Query: 241 gaagtcccagtggctttgtgttccccactacccagcttctttgagttccagatgcataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagtcccagtggctttgtgttccccactacccagcttctttgagttccagatgcataca 500

                                                                       
Query: 301 ttaggaagcattagccagaataacttcttctgtgaaggcaccacaacacaggagatagca 360
           |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||
Sbjct: 501 ttaggaagcattagccagaataacttcttctgtgaaggtattacaacacaggagatagca 560

                                                                       
Query: 361 agaacatgtgagtgcaaggctgtgcggaccacaacatggtttagcaaggacaggcagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaacatgtgagtgcaaggctgtgcggaccacaacatggtttagcaaggacaggcagagc 620

                                                                     
Query: 421 ttacactgcaaatgtttacacagatatctatagcaatgcagttcagagagataggatg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacactgcaaatgtttacacagatatctatagcaatgcagttcagagagataggatg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)