Query= MSMg01no201_c11.b1 MSMg01no201_c11.b1 CHROMAT_FILE:
MSMg01no201_c11.b1 PHD_FILE: MSMg01no201_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:05 2005
(405 letters)
>mm_chr17_32756356_32757161
Length = 806
Score = 625 bits (323), Expect = 0.0
Identities = 341/347 (98%), Gaps = 1/347 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttggtagaggaagtagagcctccccattggttccttttctccctgtgccactt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggaattcttggtagaggaagtagagcctccccattggttccttttctccctgtgccactt 288
Query: 64 tccatttctgaggtggtagtctgccagtctgagtgtttgga-tttttttctgatttcaac 122
|| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 287 tctatttctgaggtggtagtctgtgagtctgagtgtttggattttttttctgatttcaac 228
Query: 123 gacaacatgaatacttcatgcatgtttgtttatctgctgtgttccttgtggtatttggtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gacaacatgaatacttcatgcatgtttgtttatctgctgtgttccttgtggtatttggtt 168
Query: 183 tctatatctattagactttaacagatggtgtggaacaaactgattctcactctctcaata 242
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 167 tctatatctattagactttaacagatggtatggaacaaactgattctcactctctcaata 108
Query: 243 ttgtttttagctcattttaagaaatcagggccagagttcacaacctcttggtagatgtga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttgtttttagctcattttaagaaatcagggccagagttcacaacctcttggtagatgtga 48
Query: 303 agaaggggaaaatgaccacctactacaacagcttagagtggctgaca 349
||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 47 agaaggggaaaatgaccacctactacaacagctcagagtggctgaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 806
Length adjustment: 9
Effective length of query: 396
Effective length of database: 797
Effective search space: 315612
Effective search space used: 315612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_c11.g1 MSMg01no201_c11.g1 CHROMAT_FILE:
MSMg01no201_c11.g1 PHD_FILE: MSMg01no201_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:05 2005
(763 letters)
>mm_chr17_32660177_32661339
Length = 1163
Score = 700 bits (362), Expect = 0.0
Identities = 449/528 (85%), Gaps = 76/528 (14%)
Strand = Plus / Plus
Query: 1 cccttctgcttccattgcccaagtgttaggaccaccgtcacaagtcaccatgtccagcta 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cccttctgcttccattgcccaagtgttaggaccacagtcacaagtcaccatgtccagcta 260
Query: 61 gcggacagatcttaagactgttgtatacctagcaagaagggcccaaatggagattctcag 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggacagatcttaagactgttgtatacctagcaagaagggcccaaatggagattctcag 320
Query: 121 ttttccaactgggagtcatagtcacagctgagattggacccagtagaggagtgtcatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttccaactgggagtcatagtcacagctgagattggacccagtagaggagtgtcatgca 380
Query: 181 gtcacagaatgcaagggacctgaagaggaggacaggaacttgatacagaaaacaggacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcacagaatgcaagggacctgaagaggaggacaggaacttgatacagaaaacaggacag 440
Query: 241 agtcgtaagaaatcaggaaagaaaagatgggacagatgctgaatgaaagggaggtaggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcgtaagaaatcaggaaagaaaagatgggacagatgctgaatgaaagggaggtaggaa 500
Query: 301 ccgcgccgtatctcccttcccatcccgtatctcccttcccatcccgtatcttccttccca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgcgccgtatctcccttcccatcccgtatctcccttcccatcccgtatct--------- 551
Query: 361 tcccgtatctcccttcccatcccgtatctcccttcccatcccgtatctcccttcccatcc 420
Sbjct: 551 ------------------------------------------------------------ 551
Query: 421 cgtatctcccttcccatcccggagcacaaggctactcacgggaagcgagataggaaccgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 -------cccttcccatcccggagcacaaggctactcacgggaagcgagataggaaccgt 604
Query: 481 gccgtatcttccttcccatcccggagcacaaggctactcacgggaagc 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gccgtatcttccttcccatcccggagcacaaggctactcacgggaagc 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1163
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1153
Effective search space: 868209
Effective search space used: 868209
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
