BAC Information

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BAC

Clone NameMSMg01-205G24
Chromosome17 (Build37)
Map Location 70,295,621 - 70,295,932
singlet/doubletsinglet
Overlap geneLOC100043630
Upstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535
Downstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205G24.T7 (MSMg01no205_g24.b1)MSMg01-205G24.TJ (MSMg01no205_g24.g1)
ACCAG389429AG389430
length757758
length of high quality
(start - end)
632 (70 - 701)344 (77 - 420)
definitionCHROMAT_FILE: MSMg01no205_g24.b1 PHD_FILE: MSMg01no205_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:19 2005CHROMAT_FILE: MSMg01no205_g24.g1 PHD_FILE: MSMg01no205_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAGATTAACCTCAAAGGCTGAGAAGCACTGAAAGAAATGTC
CTTATTTATCAGGGAAATGAAAATCCCAATGACCCTGAGATTCTACCTTA
TACCCATCAGAAAGGATAAGATCAAAAACTCAATGGATAGCAGATGCTGG
AAAGGATGTGGAGAAAGAAAAACACCCCTTCATTGCTGGTGGGATTGCAA
ACTTGTACAACCACTCTGGAAATCAATCAGAAGGTTCTCAGAAAATTGGG
CATAATTTTACCTCAAGATCCAGCTATACTACTCCTCAGCATATACCCAA
CAGATGCTCCACCAAACCCCAAGGACAAGTGTTCCACTGTTCATAGCAAC
TTTTTTTTTTTTTTTTGGTCCCACCCCGAAACTGGAAACTACTCAGATGT
CCCTCAACCAAAAAATGGATAAAGAAAATGTGGTTCATTTACAAAATGTA
ATACTACTCAGCATTAAAAACAAGGACATCATGAATTTTGCAGGCAAATG
GATGGAACTAGAAAATATCCTGAGTGAGGTAACCCAGACCCAAAAGGATA
TGCATGGTATGTACTCATTTATAAGTGGATATTAGCCATAAAGTTTAAGA
TAACCATGCTAAATCTACAGACCCAAAGAAGCAAAGTAACAAGGAAGGTG
TAAGGGAGGATGCTAGAATCACACTAAGCAGATGAAACAAAATAGTCTTT
GGATGTG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTTTGACAGACTCCTGACCCT
TGGCGTGTTTCTTTTGGGCTGTCAACACTTGCCATCCTGCTCAGCCCCAG
AGAGACCCCGGCAGGACAGGGACCTCTCTCCTCTTGCCTGGACCTGCCAG
CAAGGAGCAATAGACATGAGAGCTGCCCAAAAGCCCAGGAGGCCTCAACC
ATACACAAGACAACCAAGGAGTGCTGAGAGTGGGAGAAATAGTCTTCCCT
AGGGTGCAGCATACCATTGCTTATCTGACTCTAAATTGTCAGCCTTGAAA
ACACATGCAAGGAAGGTTATACAGGCCGAGGTTATGTTTAGGAAAATATG
CACATATCCAGGAACATATCCCCCCCATCAATGACCACTAATGAAAAACA
AGGCTGTGTATTTTCAAGACAACAAAGAGAAATAGATAGGAGGGGTTGGA
GGAAGGAGAGAAGAGGGAAAGCCATATAATTATGTTACAATATAAAAAAT
ATATAAATATGTTATAATCTCAACGTTAAAAGTAAAAGAAAGGACGGGAG
AAATTCTAACATCACCACAAGTAGTCTCTTGAAAGATATTGGCTAAATGT
CTCTACTATTTGTTATGTCTTCACATGGTACCCTCTATTAGTCTGTCCCT
TTCAACTCACTGATTTTTTTTTCCGAGAGTCTGAGGCCAATTTGGTCTCC
ACATGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_g24.g1 MSMg01no205_g24.g1 CHROMAT_FILE:
MSMg01no205_g24.g1 PHD_FILE: MSMg01no205_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:19 2005
         (344 letters)



>mm_chr17_70295621_70296362
          Length = 742

 Score =  557 bits (288), Expect = e-163
 Identities = 307/314 (97%), Gaps = 2/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctttgacagactcctgacccttggcgtgtttcttttgggctgtcaacacttgccatc 60
           ||||||||||||||||||  |||| || |||||||||||| |||||||||||| ||||||
Sbjct: 312 ctgctttgacagactcct--ccctgggagtgtttcttttgagctgtcaacactcgccatc 255

                                                                       
Query: 61  ctgctcagccccagagagaccccggcaggacagggacctctctcctcttgcctggacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgctcagccccagagagaccccggcaggacagggacctctctcctcttgcctggacctg 195

                                                                       
Query: 121 ccagcaaggagcaatagacatgagagctgcccaaaagcccaggaggcctcaaccatacac 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ccggcaaggagcaatagacatgagagctgcccaaaagcccaggaggcctcaaccatacac 135

                                                                       
Query: 181 aagacaaccaaggagtgctgagagtgggagaaatagtcttccctagggtgcagcatacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aagacaaccaaggagtgctgagagtgggagaaatagtcttccctagggtgcagcatacca 75

                                                                       
Query: 241 ttgcttatctgactctaaattgtcagccttgaaaacacatgcaaggaaggttatacaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ttgcttatctgactctaaattgtcagccttgaaaacacatgcaaggaaggttatacaggc 15

                         
Query: 301 cgaggttatgttta 314
           ||||||||||||||
Sbjct: 14  cgaggttatgttta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 742
Length adjustment: 9
Effective length of query: 335
Effective length of database: 733
Effective search space:   245555
Effective search space used:   245555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)