CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTAGATATCATATTGGTTTAGGAAACATGGAAGTAATGAATCCA
TGCTTGTGTCCGTGACTTCCATCACTATGAGCAAATGGCTATATTTACAG
TACTAGGCATGAATTCCTTCCTAGTAAGCAGGATTTAAGTTCAATTACAC
AGCTAATGGTTACTCCTAGGATATAAGTGCCACTATTGCTTCATCAGACT
TGCGTTGTTCAACCAGTCATTGTGGTTTGTAGGCTTTCAAATGTGTAGAA
TTGCTGATTGTTTCTCTCACTGGTAGCTGGCATAGCACCTTCTGATATTG
TGTGAGATAGTACACAGGGAATAAGCTTCTGATTGAGTTTTTATTCAGCT
CTATTTTTAAAATGCCCATCTCCAAAGTGTGTTGTCTTCAGTAATAGATC
CTGTCTCCAAGTTCTAAAAAGGAAACCAAGGGCAATGTAAATGTTATACC
AATTATACATACTGTATTTTATTTTGAGACAGAGTCTTACTATGAAGTTG
TAGTTTGCCTGGAACTTGCTATGTAGACAAGCTGACCATAAACTCACAAT
GATCTTCCTGTCTTTGGCCTTAAAGTGCTAAAATTAAAAGTGCAAACAGC
CAACTGGAAATACAAAGCCTTTGTGCCTTGTCATGGTTATTTAATCTTTA
AATAAGCTGTTTTTATGTCCATCAAGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGAACACCTGTTCTTCTGTT
TCACAAACAACTAACACTATGTTTCACCATAGAAACAATGAACATAGAAA
TCTTTACTAGAATGTCCAATTCATGGAATAGTATTAGGCACAAAACCTAA
TTATACTCTCTCATTCAAAAACAGTTTTGACAAATACTTGAAATTAATAT
GTACTGAGGACTTTTTCAATATACTAGACGCCTCATAGTGTCCTAAATAT
TGTGATCCTTATTTTTCAAGTCTATTTACTATTCACATAACCACATAAAC
ACAAGATGAATGAGAGTGTAAATAAATTTAATTCATTATGAAAAATAGCT
CTCCATTTTTGAGAGCGAACACTGTTCTGGGCAAGCAGTGGATGTAATAG
GTATTAGCATCACTTCAAAATTACTATCCTAAACTTTCCTTCCTTAAATT
GGTGTTTCTCAATGCTGCTAATCTTGACTACATTATCTCATGTTGTGTGG
TAATCCATATCCATAAATTTATTCTCACCTCTATATCATAGCTCTCAATC
TGTTAATATCATAAATTGTTATATAAATATCTGATATTTATGATATCTGG
TATGTGACCCCAAAAGGCTTTACTATTAACAAGATGAGAACTTCTGTCTT
CTACTCAGAAATCATAATTGGCAAGATTTN

Query= MSMg01no206_e14.g1 MSMg01no206_e14.g1 CHROMAT_FILE:
MSMg01no206_e14.g1 PHD_FILE: MSMg01no206_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:25 2005
         (652 letters)



>mm_chr17_38888868_38889919
          Length = 1052

 Score =  717 bits (371), Expect = 0.0
 Identities = 566/639 (88%), Gaps = 30/639 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttgaacacctgttcttctgtttcacaaacaact-aacactatgtt--tcaccataga 57
           ||||||||||| ||||||||||||||| |||||| | |||||||||||  | |  |||||
Sbjct: 629 cttttgaacacttgttcttctgtttcataaacaa-tgaacactatgttaat-a--ataga 574

                                                                       
Query: 58  aacaatgaacatagaaatctttactagaatgtccaattcatggaatagtattaggcacaa 117
           ||||||||||||||||||||||||||||||||||||||  |||| || |||||| |||||
Sbjct: 573 aacaatgaacatagaaatctttactagaatgtccaatttgtggactattattagacacaa 514

                                                                       
Query: 118 aacctaattatactctctcattcaaaaacagttttgacaaatacttgaaattaatatgta 177
           |||| || ||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct: 513 aaccaaagtatactctctcattcaaaagcaattttgacaaatacttgaaattaataagta 454

                                                                       
Query: 178 ctgaggactt-tttcaatatactagacgcctcatagtgtcctaaatattgtgatccttat 236
           |  |||| || ||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 453 ccaagga-ttctttcaatatactagaagcctcatagtgtcctaaatactgtgacccttat 395

                                                                       
Query: 237 ttttcaagtctatttactattcacataaccacataaacacaagatgaatgagagtgtaaa 296
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 394 ttttcaagtctatttactattcacataaccacataaacacaagatgaatgggagtgtaaa 335

                                                                       
Query: 297 taaatttaattcattatgaaaaa-tagctctccatttttgagagcgaacac-tgttctgg 354
           |||||||||| |||||  ||||| |||||||||||||||||| || || |  ||||||| 
Sbjct: 334 taaatttaatacattacaaaaaaatagctctccatttttgag-gccaaaaagtgttctgt 276

                                                                       
Query: 355 gcaagcagtggatgtaataggtattagcatcacttcaaaattactatcctaaactttcct 414
           ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||
Sbjct: 275 gcaagcagtggatgtaataggtattaatatcacttcaaaattactatcctaaacattcct 216

                                                                       
Query: 415 tccttaaattggtgtttctca---------atgctgctaatcttgactacattatctcat 465
           |||||||||| ||||||||||         |||||||||||||||| ||||||||||   
Sbjct: 215 tccttaaattagtgtttctcagtcttgctaatgctgctaatcttgattacattatct--- 159

                                                                       
Query: 466 gttgt-gtggtaatccatatccataaatttattctcacct-ctatatcatagctctcaat 523
           ||||| ||| ||||||||||||||| |||||||| ||| | |||||||||| ||||||||
Sbjct: 158 gttgttgtgataatccatatccatatatttattcgcac-tgctatatcataactctcaat 100

                                                                       
Query: 524 ctgttaatatcataaattgttatataaatatctgatatttatgatatctggtatgtgacc 583
           |||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| 
Sbjct: 99  ctgttaatattataaattgttatataagtatctgatatttatgatatctggtatttgact 40

                                                  
Query: 584 c-caaaag-gctttactattaacaagatgagaacttctg 620
           | |||||| | |||| ||  |||||||| ||||| ||||
Sbjct: 39  ctcaaaagtg-tttattacaaacaagattagaacctctg 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)