Query= MSMg01no206_l02.b1 MSMg01no206_l02.b1 CHROMAT_FILE:
MSMg01no206_l02.b1 PHD_FILE: MSMg01no206_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:57 2005
(524 letters)
>mm_chr17_76954698_76955621
Length = 924
Score = 915 bits (473), Expect = 0.0
Identities = 511/524 (97%)
Strand = Plus / Plus
Query: 1 tagagttttagtgtacacttttaatttataaatgaccaaaatttataatatgttgatatt 60
||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct: 201 tagagttttagtgtacactttaaatttataaatgatcaaaatttataacatgttgatatt 260
Query: 61 aaatgacaaggtatagatttgctgggatcaaataatattttatctcctattttaaagatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgacaaggtatagatttgctgggatcaaataatattttatctcctattttaaagatt 320
Query: 121 ggagtgcctgtcatgcttttaagtcttacagtctttggagctccagtctttgatcttctc 180
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggagtgcctgccatgcttttaagtcttacagtctatggagctccagtctttgatcttctc 380
Query: 181 aacaacatacacaaaatcacacttatctgccttaagccattggtggttctatttgctact 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaacatacacaaaatcacacttttctgccttaagccattggtggttctatttgctact 440
Query: 241 gttttgtgtgtaatgctgtagaagggctctgtgttttgccttctaaatcaccaccactgc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gttttgtgtgtgatgctgtagaagggctctgtgttttgccttctaaatcaccagcactgc 500
Query: 301 cctaatcatcttttctgaagccagaggaaggaagatgtcagcgttgagtcagcagttgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctaatcatcttttctgaagccagaggaaggaagatgtcagcgttgagtcagcagttgta 560
Query: 361 tgctctctgtggaagtcatgcttttaacgtttctaaatctcatggatatttggggagatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctctctgtggaagtcatgcttttaacgtttctaaatctcatggatatttggggagatg 620
Query: 421 ggcacaatgaanatattcatcgacatgtgttgaatctcatggcaaacttgtatttttgta 480
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 agcacaatgaaaatattcattgacatgtgttggatctcatggcaaacttgtatttttgta 680
Query: 481 agtctatttccagagcttttttttcctctcatcaaataatttta 524
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtctatttccagagcttttttttcctctcatcaaataatttta 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_l02.g1 MSMg01no206_l02.g1 CHROMAT_FILE:
MSMg01no206_l02.g1 PHD_FILE: MSMg01no206_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:57 2005
(581 letters)
>mm_chr17_76975324_76976304
Length = 981
Score = 1038 bits (537), Expect = 0.0
Identities = 570/583 (97%), Gaps = 5/583 (0%)
Strand = Plus / Minus
Query: 1 cacagcagcatgaagtcaatagagcacatactcctcaggaccatg--tttttacccaaag 58
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 922 cacagcagcatgaagtcaatagagcacatactcctcaggaccatgcc---ttaaccaaag 866
Query: 59 atcacccactgtgaatgtgccgaccagtgggtcgcactccatgagttctaagtccatgtt 118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 atcacccactgagaatgtgccgaccagtgggtcgcactccatgagttctaagtccatgtt 806
Query: 119 gttcttcctgcatgaccctcagtaaagtcctctgggaaatgtccctggatagaaaagaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gttcttcctgcatgaccctcagtaaagtcctctgggaaatgtccctggatagaaaagaaa 746
Query: 179 atttaattttattggtgttgaggtttgttatttatgtgtttttaacctgcatgactctaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atttaattttattggtgttgaggtttgttatttatgtgtttttaacctgcatgactctaa 686
Query: 239 taagtatgcatgtagctacatcctaaaaggaagggtctcctactttttcactcccaattt 298
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 taagtatgcatgtagctacatcctaaaaggaagggtctcctactttttaactcccaattt 626
Query: 299 acttctgacccctttcatgatcatgaatacttagtttcaccttcacagcttctcagtaac 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 acttctgacccctttcatgatcatgaatacttagtttcaccttcacagtttctcagtaac 566
Query: 359 aaagcaaaaatagctgcttgcaggttaaagaaagaaagacatctttgcatgcagacacct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagcaaaaatagctgcttgcaggttaaagaaagaaagacatctttgcatgcagacacct 506
Query: 419 agcagtacaaaagcaaaatgttccttggaatagacagttcaaatgctagtttctgacaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcagtacaaaagcaaaatgttccttggaatagacagttcaaatgctagtttctgacaag 446
Query: 479 attctccagttaaaggctcctcttttattctactgaggaaatctgtattgctttcccaac 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 attctccagttaaagactcctcttttattctactgaggaaatctgtattgcttccccaaa 386
Query: 539 agtcactggaagaagttgaaatgtacacctgggtaattaggca 581
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 agtcactggaggaagttgaaatgtacacctgggtaattaggca 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
