BAC Information

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BAC

Clone NameMSMg01-208E22
Chromosome17 (Build37)
Map Location 20,823,900 - 20,824,075
singlet/doubletsinglet
Overlap genenone
Upstream geneEG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073
Downstream geneV1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208E22.T7 (MSMg01no208_e22.b1)MSMg01-208E22.TJ (MSMg01no208_e22.g1)
ACCAG391233AG391234
length703777
length of high quality
(start - end)
308 (46 - 353)185 (204 - 388)
definitionCHROMAT_FILE: MSMg01no208_e22.b1 PHD_FILE: MSMg01no208_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:05 2005CHROMAT_FILE: MSMg01no208_e22.g1 PHD_FILE: MSMg01no208_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGAAAGCAAGTTTTTTCTTTAGCCCTAGATTCCAGGCAGAACT
ATTGAGCATAGATAATTTTCCCCCCTCAGGCCAGCTTTTTCTTTTTTTTT
AATTTTGTTAATAAAAGGGAGGAAATGTAGTCTCCCCTCCCCTAGCCTGA
AACCTGCTTGCTCGGGGTGGAGCTTCCTGCTCATTCATTCTGCCATGCCC
ACTGCTGGAACCTGCGGAGCCACACACGTGCACCTTTCTACTGGACCAGA
GATTATTCGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTAGTGT
CGCAATTTTTTTATTTGACCCCCCCCCACAGTAATTGTCTTGGCTACATT
CTTTTCTCTTGCCACCCACCCCCACTTCTCTTCCAGGTTTCCAAAATGCC
TTTCCAGGCTAGAACCCAGGTTGTGGTCTGCTGGCCGGACACAACAATCT
ACTCTGATACCATTTTAGCCAGGAACACAGAGTACAGCTGACTCCCAGTA
ACACCTTTTCCAAGTTCCTCTTAGAATGGCTCATTAAGCACCACTTAATG
AATTTTACTGATTTCCTCAAACAAATTCACACTCATTATTCCTGCAAACA
GTAAACCTTGCCTATCACAACAAAACACCAGCAACTGGTTTAAATTTCTG
TGT
GGGGGGGGGGGNTTGTTGGTGTGGTGTGGTGGGTGGATGAAGGCNGTGGG
GGNNNNNNNNNNNCCAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGGA
ATGAATGCTCACTTCTATAGTTCAGAGTAGACAGTCACACTGGGAAGAAA
ATAGACAATTGTTAACATTTCAGTACGAAAGAAATTAATATTTTACTCCT
GTGATACTGAAGCCATAAAATTGTACGTCTTATAAAACAGAGTGAAAATG
TACTCCTTGAAAAAGTCATTTATTATAAGAAGTAGATGAATGAACAATAA
GTTCATGTTAAAAATTGAAACATGTGCCCCATAAGATTTTTTACAGTATC
AACTAACCTAGACTTCTGGGAACTTCTAGATAGATTCCANAAACAAAAGC
CCATGGTTCATGTCCTCCCCCCACAAACACACTACCCCCACACCNCAATT
NAAAAAGGTCTGGCTGGGCTGGCCTCAGTGGAAGAGCAGGCAGCTAATCT
TGTGTAGAATTGATGCCCCAGAGAAGGTGAATGTGGTTGGCAGTGTGAGG
TGGCGCCGCTTAAATTTCCTGCTCCTTGGTATTCCTTCCTCGTTCCCTCT
TATCTTTTACCTCCCCCGCCATTTTTATTGTATCTTACAGCTATATTTCA
TCTCCTCTTTACCGTTTCTTTTTATTTCTATGCAAAAAAGCTTTTTCTCC
CGCCGTTTTATCCTATTTTCCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_e22.g1 MSMg01no208_e22.g1 CHROMAT_FILE:
MSMg01no208_e22.g1 PHD_FILE: MSMg01no208_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:05 2005
         (185 letters)



>mm_chr17_20823693_20824277
          Length = 585

 Score =  340 bits (176), Expect = 2e-98
 Identities = 176/176 (100%)
 Strand = Plus / Minus

                                                                       
Query: 8   gttaacatttcagtacgaaagaaattaatattttactcctgtgatactgaagccataaaa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gttaacatttcagtacgaaagaaattaatattttactcctgtgatactgaagccataaaa 324

                                                                       
Query: 68  ttgtacgtcttataaaacagagtgaaaatgtactccttgaaaaagtcatttattataaga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgtacgtcttataaaacagagtgaaaatgtactccttgaaaaagtcatttattataaga 264

                                                                   
Query: 128 agtagatgaatgaacaataagttcatgttaaaaattgaaacatgtgccccataaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtagatgaatgaacaataagttcatgttaaaaattgaaacatgtgccccataaga 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)