BAC Information

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BAC

Clone NameMSMg01-209C11
Chromosome17 (Build37)
Map Location 8,325,404 - 8,325,707
singlet/doubletsinglet
Overlap geneRnaset2a
Upstream geneRps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822
Downstream geneFgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817, Pde10a, 1700010I14Rik, EG667165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209C11.T7 (MSMg01no209_c11.b1)MSMg01-209C11.TJ (MSMg01no209_c11.g1)
ACCAG391787AG391788
length704694
length of high quality
(start - end)
308 (45 - 352)279 (76 - 354)
definitionCHROMAT_FILE: MSMg01no209_c11.b1 PHD_FILE: MSMg01no209_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:12 2005CHROMAT_FILE: MSMg01no209_c11.g1 PHD_FILE: MSMg01no209_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:12 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGCGGTCCACCATAGCTTCCTGCATGAGTTTGGATTGTGACCCG
AGAGGGTAGATTCCAGGCTGCAAGTGTAAGTACTGGCTTGCCATCGCTCT
GTGGCAGCAAAGGACAAGCAGAAAAGAGGAGGCAGGAAAGGTCCCCAAAA
CCACAGAAATGCTCCCAAATCCATATAAGCTTGCCACTGCCTGCCCTAGC
CATCAGTGTATGATAAACATGGGTTCCAAGAAAGTATAAAATACTCCAGT
TTCAAAACAATATGTATTCTTAGTTACGCCACCAGTGCCTTGGGTAGACG
TGCTATTTTTTCTGCCCAACCCGCCGCTAAGTTTTGTGACCAGGGGTTTT
ACTGCTGCATTCTCATGGCATTACTGAAAAGCGCTGCTTAGCACCGGTGG
TCAGACACTATCCACCTGACACAGGCGGCCCAGGAATAAAGCGGAGAAAG
ACGGGCGAGCTGTGTCATGTGCTCTTCTGAGTGAAGACAGCTGCGTGCTA
GCCCATGCGTGCTAGCCCATGCTGCACTTGCAGGTGCTCCGAGAACCACC
TTGCAGTAGCTTTTACACTAAGTAGTGAGTAAGCATGATGTACGGTCTAT
GGTACCTTGTTTGTATCTTATGAAACAGACAGGAATCCTACATTTGCGTG
GGGA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGGGACAGAGAGAAATCGGGG
GACGCCCTGTTTCATTCTCTCTGGCCCCTACAGGAGAAATTCTTTACCCC
CTATATGTATTGTCTAATGTCAATTCATGTATATCTCTTTTGTTTCATTG
TCTGAATGATTGTGTCGTTGTCTGAATGACTGTTTTATGTTTCATGTTGA
AAAAAATAAAACAAAAATAATGGGTAAAACTTTACCTGCTGATTCACTCT
CAGTTTGCACAAAGGAGGCTGAGAAAGAGCCTTCACTATAGCCATAAATC
AAGTATTTTTAGACAGCCCCTGCTACAAACTGTTTTTAAAGAAAAGGAAT
CTGCAACCTCTTAGTTCTAAAGCAAATAAGCTGATAGTTGTTTTTTCCTA
AAACTTTCTCTACAAGTTTGTGATCATTGTGTTTAGCAAATAACAAATTG
CTTTTTTATCTTACAAGTATAGCTATAAAAGGTAAAACTCTTTAATTAAT
CTAAATTCATAAGATTCATGTAGCCACTTCATTTGGTTTTTGATTGGTCT
TAAAGGTATAAATATGATCTAACATGTCTCGGTCATAGAAAATTGGTTTA
TAAGTTATTTGGGTATAATTAAAAAGATGTAACACTGGTTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_c11.b1 MSMg01no209_c11.b1 CHROMAT_FILE:
MSMg01no209_c11.b1 PHD_FILE: MSMg01no209_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:12 2005
         (308 letters)



>mm_chr17_8325201_8325907
          Length = 707

 Score =  551 bits (285), Expect = e-161
 Identities = 300/305 (98%), Gaps = 1/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgcggtccaccatagcttcctgcatgagtttggattgtgacccgagagggt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgcggtccaccatagcttcctgcatgagtttggattgtgacccgagagggt 263

                                                                       
Query: 64  agattccaggctgcaagtgtaagtactggcttgccatcgctctgtggcagcaaaggacaa 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agattccaggctgcaagtctaagtactggcttgccatcgctctgtggcagcaaaggacaa 323

                                                                       
Query: 124 gcagaaaagaggaggcaggaaaggtccccaaaaccacagaaatgctcccaaatccatata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcagaaaagaggaggcaggaaaggtccccaaaaccacagaaatgctcccaaatccatata 383

                                                                       
Query: 184 agcttgccactgcctgccctagccatcagtgtatgataaacatgggttccaagaaagtat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcttgccactgcctgccctagccatcagtgtatgataaacatgggttccaagaaagtat 443

                                                                       
Query: 244 aaaatactccagtttcaaaacaatatgtattcttagttacgccaccagtgccttgggtag 303
           ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||
Sbjct: 444 aaa-tactccagtttcaaaacaatatgtattctcagttacaccaccagtgccttggggag 502

                
Query: 304 acgtg 308
           |||||
Sbjct: 503 acgtg 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space:   208702
Effective search space used:   208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)