BAC Information

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BAC

Clone NameMSMg01-209J11
Chromosome17 (Build37)
Map Location 16,004,305 - 16,004,583
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209J11.T7 (MSMg01no209_j11.b1)MSMg01-209J11.TJ (MSMg01no209_j11.g1)
ACCAG392060AG392061
length721715
length of high quality
(start - end)
---279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no209_j11.b1 PHD_FILE: MSMg01no209_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:46 2005CHROMAT_FILE: MSMg01no209_j11.g1 PHD_FILE: MSMg01no209_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAGCACCCGCGGAATTCCTGAGGATTACCCGACATGAGCCATGCTAAA
CAGAGGCTAGGTAAATTCTACTTTGCTAGAAACACACCCCCTGGCAAAGT
GTAATTGTTGATTTTCTGATTGAATCAAGCAAGGCGCGCACGCATGGCAC
TTTGTGCCACAGGAAATTCCAAAACACATTCCCACAAAACCCCATTGCTA
TCTCATAGCGTTACGGTTCTGCTTTCTGCGTATGAAAACAAGGCTTACAG
CTTTAAAATGTTATTTTTATGTGCGTGTCTGTATGCCCCATTCTTTATGC
CTGACTGAGGAGGTATAATTGGGGCGTTGTATTCTCTGCCCACCCCCCCG
CCACCTGCATGCAACCATAACCTGGTGTTAGCAACTGAATCCCCCCCCTC
TGTAACACGTATAAGTCCTTTCAGCCACTCGATTTTTTCTTTTACCTCCC
GTACCACTTCCAAAATTCACTGCTCCAAACCCTTTGAATATGACTCTTCT
GCCATCTGACCTATATGTTACCCGTCTTTCCCGTTAATTTTCATCCGGAC
TTACAGTTTGGATTCCATACCCTCACCCGACCTCTCTATTTCTTAATCCC
ACCCATTGCTTACTCTCACCAACCATCTACGTTCCTCATATTCCTTTTCC
CACCTGTTTCTCCCGCCCCCCCATCTTTTTACTGTTCTACCCCCCCACTT
TATTCACTATATCCCCCCCGT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCTAGTATTTTTCATCTGAA
TTGTTCTCAATGTGACTATTACCAAGGAATTGATATGAAGACCTTTGAAG
GTTACATGTTGACTTTGTTTTTCATGTTGCCTATATATTTGGAATTGAAT
ACCTTTGTTAGCTATGACTTTGGGTGTGAGCTTCTGACCCATTTCCTGCA
AATGGCTATATGGGTGGTCTCTACTTGTTGTTACCCTTATTGGACTTAGA
ATCAACTTAGTGATGCTTGCATCTCTTTGAGGAGCAGGTGGATGTTCCAA
CCCGGTACTTTANATCCGTCCATNGCCAACCCCCTTAGAACATTCTGAAC
TGAAGGTAAGAAATATGCGCCACACAAATAAAAACACTCTGATGGTGGGA
GTGTGTCATGCGATCTGGACAATAAGCAGGCACTGAGGTGCTAGGAATCA
TGATACTAGAAAACAAAAGATGCAGCTTCAGACCTGGGGATAAATCTCTG
CTCTGGACCTAATATGTCAGCATTAGGGCGTCAAAGGGTGACATATATAT
TCTCTGACTGTGAAGACTATTCCCTTTTGGCCCTGAGGTATTGTATAGTG
AGACTCCTGTGACATATGACATCTCTATCCCGCTTGGGGTGTTGGAGTTA
ATATATTCGCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_j11.g1 MSMg01no209_j11.g1 CHROMAT_FILE:
MSMg01no209_j11.g1 PHD_FILE: MSMg01no209_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:46 2005
         (279 letters)



>mm_chr17_16004105_16004783
          Length = 679

 Score =  493 bits (255), Expect = e-144
 Identities = 273/279 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtctagtatttttcatctgaattgttctcaatgtgactattaccaaggaattgatat 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 479 tttgtctagtatttttcatctgaattgttctcagtgtgactattaccaaggaattgatat 420

                                                                       
Query: 61  gaagacctttgaaggttacatgttgactttgtttttcatgttgcctatatatttggaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaagacctttgaaggttacatgttgactttgtttttcatgttgcctatatatttggaatt 360

                                                                       
Query: 121 gaatacctttgttagctatgactttgggtgtgagcttctgacccatttcctgcaaatggc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaatacctttgttagctgtgactttgggtgtgagcttctgacccatttcctgcaaatggc 300

                                                                       
Query: 181 tatatgggtggtctctacttgttgttacccttattggacttagaatcaacttagtgatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tatatgggtggtctctacttgttgttacccttattggacttagaatcaacttagtgatgc 240

                                                  
Query: 241 ttgcatctctttgaggagcaggtggatgttccaacccgg 279
           ||||| |||||| ||||||||||||||||| ||| ||||
Sbjct: 239 ttgcagctcttttaggagcaggtggatgttgcaaaccgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)