Query= MSMg01no211_d03.b1 MSMg01no211_d03.b1 CHROMAT_FILE:
MSMg01no211_d03.b1 PHD_FILE: MSMg01no211_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:09 2005
(645 letters)
>mm_chr17_85729328_85730372
Length = 1045
Score = 1031 bits (533), Expect = 0.0
Identities = 575/589 (97%), Gaps = 2/589 (0%)
Strand = Plus / Minus
Query: 5 gaattccaagtggcctttcttaaggcacctagcctatcttaatttgaatacttcttatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattccaagtggcctttcttaaggcacctagcctatcttaatttgaatacttcttatat 529
Query: 65 actaaagaaccaatcttcatttttgtgcatagataatccccaacctataccgtttagact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 actaaagaaccaatcttcatttttgtgcatagataatccccaacctataccgtttagact 469
Query: 125 tctgatatttccattttttgcctgtgtcaagtgaattatactcatcagaaactgtacctc 184
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 468 tctgatctttccattttttgcctgtgtcaagtgaattacactcatcagaaactgtacctc 409
Query: 185 aaagtttgagtgttgattcccccacccc-cccttgggctgttgatatacaatacaatccc 243
|||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 408 aaagtttgagtgttga-tcccccccccctcccttgggctgttgatatacaatacaatccc 350
Query: 244 ttctttagattctggttggtagcagcaagtagcagcccccatcagccacacaaccatgac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttctttagattctggttggtagcagcaagtagcagcccccatcagccacacaaccatgac 290
Query: 304 aagaagccacagacaactctagcccttcagcacactgtacaactaagtcaggatgcctgc 363
||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct: 289 aagaagccacagacaaccctaacccttcagcacactgtacagctaaggcaggatgcctgc 230
Query: 364 tagtctggatgacttttggggaggaggactggagagatggttcagagcattggctgttct 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tagtctgcatgacttttggggaggaggactggagagatggttcagagcattggctgttct 170
Query: 424 tccagcagtcctgagttcagttcccagcacccacatggcagttcccaaccttctataact 483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tccagcggtcctgagttcagttcccagcacccacatggcagttcccaaccttctataact 110
Query: 484 gtagtcctatggaatctgatgtcctcttctggagtacagacatacatataggctaacacc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 109 gtagtcctatggaatctgatgtcctcttctggagtacagacatacatataggcaaacacc 50
Query: 544 cacatacatagacaaaataaagtaaatattattcctttaaaaattctga 592
|||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 49 cacatacatagacaaaataaagtaaatattattctttttaaaattctga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no211_d03.g1 MSMg01no211_d03.g1 CHROMAT_FILE:
MSMg01no211_d03.g1 PHD_FILE: MSMg01no211_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:09 2005
(523 letters)
>mm_chr17_85710964_85711886
Length = 923
Score = 905 bits (468), Expect = 0.0
Identities = 507/520 (97%), Gaps = 1/520 (0%)
Strand = Plus / Plus
Query: 1 tcttccttttctccctgggaagctaatttggggaaggaaggcttatgtatcactctttcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 201 tcttccttttctccctgggaagctaatttggggaaggaaggcttatgtatgaatctttcc 260
Query: 61 gttttcttttaacaattagtgcatatccatgcttatttcttaactgaacactcagctgct 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttcttttaacaattagcgcatatccatgcttatttcttaactgaacactcagctgct 320
Query: 121 cttgcatgcacatatttgcatatactgtgggtatgatgcatgagtattaaaagccatccg 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 cttgcatgcacatatttgcatatactgtgggtacgatgcatgagtattaaaagccatccg 380
Query: 181 ggatttacacgacacacaaaaaacagtttgatttattttaaatttgactaattattaatt 240
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 381 agatttacacgacacacaaaaaacagtttgatttattttaattttgactaattatgaatt 440
Query: 241 aaaagtatagaaaatataataaactatccatgcacttttcctaaaagatagcattttctg 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 aaaagtatagaaaatataataaactatccatacacttttcctaaaagatagcattttctg 500
Query: 301 acaaacaggcaaacaattgactatcatgatttgtgtggggcattagatgtctcatccaca 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaacaggcaaacaattgactatcatgatttgtgtggggcattagatgtctcatccaca 560
Query: 361 tttcacaagaattccctatttgtgcatatgtaattataattttaaaatattctgattttt 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttacaagaattccctatttgtgcatatgtaattataattttaaaatattctgattttt 620
Query: 421 ataattgacaatttttccaaatgttctttctaaatgaattctagaaatgagctctttaat 480
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 621 ataattgacaatttt-ccaaatgttctttccaaatgaattctagaaatgagatctttaat 679
Query: 481 ttgtattatgaaatttaaaagccaataaagttatgaaatg 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgtattatgaaatttaaaagccaataaagttatgaaatg 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
