BAC Information

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BAC

Clone NameMSMg01-212G11
Chromosome17 (Build37)
Map Location 11,542,938 - 11,543,121
singlet/doubletsinglet
Overlap genePark2
Upstream genePacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212G11.T7 (MSMg01no212_g11.b1)MSMg01-212G11.TJ (MSMg01no212_g11.g1)
ACCAG393773AG393774
length713732
length of high quality
(start - end)
184 (120 - 303)222 (71 - 292)
definitionCHROMAT_FILE: MSMg01no212_g11.b1 PHD_FILE: MSMg01no212_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:09 2005CHROMAT_FILE: MSMg01no212_g11.g1 PHD_FILE: MSMg01no212_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCCGCAATACGAATNCACTTTCGGAGCGGAGCCGCGGAATTCT
ATTATACTGGAACTCGTAAGCCAACTTATGGAACAGAATACAATTGTCAG
GCTGCATATTTCTCGAAATAATATCCATTAAAATATCAAATTGATCCAAT
ATAACTCAAGAATCATTCAACAATTGCAACTTTAAAAAGAAATAGCATTA
AGAAGATTTTCTACCTGCATGATGCGAGTTAACGATCATGTATTTTAAAA
TAATAAATTCAGTTTCTGCCTCTGTGGTTGGTGCCTATTTGCTGAATATC
TGTTTCCTATCTCGTTGTCTGCAAGAACTGAGTGTGAGCTGGAGAGCCTC
TACATCATATACATAGGCTACTCACTGTGTACATCGTAGAAGGCGAAGTT
TTAAGCACACAAAGTCATTGTGATTGTGTGCTACACATGGCCTGCGAGCT
TTATTTTGAAAGCCATTGTTATTGTGGGCTATGCATCTATTCTGTGAGTT
ATACTTGAGCTAACTATAGACTGCTAAGATAAGACATCATGTTTGGCCAT
TTCCACCACTGTCCCCCTGACAGGAGGAAACTCAATGGCACTTTATGAAC
TTAGCACCTACTACCCGATGAGAAGTGTCCCAAATCCCTCTATTTTGTCT
GTTAATACCCTGTGTGTCCAAACGTGCGCCTAAGATGTTAATGCCTTTCC
AATTAACCTCTTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTCCCTGAAACTAGAATTCAGTCTCCAA
GCATATCAGCTGACATCATTGCCACACCAGTCAGCTGTGCCAGCTTGAGG
AAGGCCAACAGGAGCAGCCTGCAGACTTGCTATGCCTCAGAGGAGGAGGG
GGTGGAGGGGAGATCGGAGCCTCAGCTGAAATTCTGGACATCCCTCCCAG
CCATCCGTATGCCATTCTGTCTACCTGCATGTGGCTGTGGCCCAACGAGA
TACTGGAGTATGTTTACTGACGGAATAGCTGACGAAGGCTCTATCTCTGA
TTTTTTTTTTCCCCCCCCCCCCCCCGCCAGTTGAAGACTTCCCAGGATGG
CTGCTTCTCCCCCTCACAAGATACTGATTGTTACCACTCTGTCATGTTCT
GCACCGTCATACACCTTTTTGGCCCGCCAGTCGTATATTTACGTGACACG
AACTCCCCTTGCCCATTGTTCCTGCAATTAGTCTAGGTTTATATATTGGT
TTATTCTTTTCCAATACATCCATTCCTACGCTTATATCTTCCTGCCCCTT
ATTTATTGGTTTCCGCTTCTCAATGATGCTTTTGTATTTCCCCTCGTATC
TGACCTTCCACCCCATCCCTCCTGATTTAACTCCAAACTCTTCTTCCCGT
CTTGCGATCCTTTCGGGTCCTGCGTTCTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_g11.b1 MSMg01no212_g11.b1 CHROMAT_FILE:
MSMg01no212_g11.b1 PHD_FILE: MSMg01no212_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:09 2005
         (184 letters)



>mm_chr17_11542738_11543321
          Length = 584

 Score =  348 bits (180), Expect = e-100
 Identities = 183/184 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatccattaaaatatcaaattgatccaatataactcaagaatcattcaacaattgcaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatatccattaacatatcaaattgatccaatataactcaagaatcattcaacaattgcaa 325

                                                                       
Query: 61  ctttaaaaagaaatagcattaagaagattttctacctgcatgatgcgagttaacgatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttaaaaagaaatagcattaagaagattttctacctgcatgatgcgagttaacgatcat 265

                                                                       
Query: 121 gtattttaaaataataaattcagtttctgcctctgtggttggtgcctatttgctgaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtattttaaaataataaattcagtttctgcctctgtggttggtgcctatttgctgaatat 205

               
Query: 181 ctgt 184
           ||||
Sbjct: 204 ctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)