BAC Information

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BAC

Clone NameMSMg01-213F01
Chromosome17 (Build37)
Map Location 84,287,874 - 84,288,155
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao
Downstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213F01.T7 (MSMg01no213_f01.b1)MSMg01-213F01.TJ (MSMg01no213_f01.g1)
ACCAG394352AG394353
length716738
length of high quality
(start - end)
319 (43 - 361)47 (71 - 117)
definitionCHROMAT_FILE: MSMg01no213_f01.b1 PHD_FILE: MSMg01no213_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:18 2005CHROMAT_FILE: MSMg01no213_f01.g1 PHD_FILE: MSMg01no213_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATACCCATCTCGATCCCAATGTTAGACTTCCCATTTTGAGACGACCT
TCTTCTGCAGGTCCACACCCCACCCATCTATCCAGACACCTTGAAAACTG
CCTTCTCCTAGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACA
CACACACACACACACACACACACACACCGTGAATGCTTGAATGTCTTATT
CATAACTTTCCTTCTGGCCCTTCTATCCTTTGCAGAGATCTGAGAGATCC
CTCTCTCAGGCATCCCTTCCTCCAAAACACTCATCCAGTGCCTAGAAAAT
GGCACTCGTATTGAATCGCCGCTGGAAGACGGTGATACAGTCAGGACGGA
CATGGTGGGATGAAGCACCCAACGACATGTGGCCATGATGGAAACCTTCT
CCTAGGCAACAGCCTCTTTGGGGCTTTCATTTTGTAGCTGAGTAACTCTG
CTTTTGAAGGAACACTATTTTGCCAGGCAGGTGCCAACGGCCAAGCACGC
TGTTTCTATTGACCAAGGCCCCGCCATCTAGGCTCTTTCTCCCCGTGAAC
AAACATAACATCTCTCTGGGAAGATAGAAAGCGCAGCCCTAGATGGCGTT
GCGAAAGGTTCTTTAATTAACGCAGTCCTGGGGAGGGAAGACAGTGTTGT
CCCCCTTCACTGTGTN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGTGGCTGTTTTTGAACTCACGTAAGTC
TTTCCTGCCTAGGTCTCTCCAGTGGCGGGATTACAGGCATGTGGATCCTT
TTTACGTAGTTTATTATGGGAAGAAACGCTCGACTGTGCTTAGGGAAGAC
AGTGCTGGTAAATTCAGGATGTCAATGTTTTGCGAGAGCAGTGCTGGTGG
TTAGCTGAGAGGAGGAAGCCCTAGGATCATGCTGGTAGTGAGTTCAGGAG
GAGGATGCTCTGGCAGGATGGTGCTGGGAGTGAGCTGGAGAGGAGGATGC
TCTGTTTTTTTTTTTGCCCCCCCCCCCCGCCCCTGCACAGGATGACGCTC
TGGTAGGATGGGGCTGCGCCCCACCTGAAAAGAACCATGCTCTGGTAGGA
CGGGCCTGGCAGTGTTTTGTAGACCATGACTGTTTCTGGGAGGACTGGGC
TTGTCAGCGAGCTGGACAGGACGCCGTTCTGGCCCCATGCGCCTTTGTAT
CGTTTCGCCTTTTTTCCCCCCTCCCCCCCCCGTTTCCCCGTTCCCCACCT
CTTTCCTTTTTGCGTCCCTCTTTTTTCTCACCCCCCTCCCCTCTTTCTTC
CCCTTGTTTCCCCCCTAATCTTTTCCTTTTCTCCCCCTTCTCTTCGTTCG
CCTCTCCTTTCCCATTCCGCCCCCTTTTTCCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_f01.b1 MSMg01no213_f01.b1 CHROMAT_FILE:
MSMg01no213_f01.b1 PHD_FILE: MSMg01no213_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:18 2005
         (319 letters)



>mm_chr17_84287831_84288552
          Length = 722

 Score =  286 bits (148), Expect = 1e-81
 Identities = 221/282 (78%), Gaps = 57/282 (20%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatacccatctcgatcccaatgttagacttcccattttgagacgac---cttct 61
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||
Sbjct: 325 gaattccatacccatcttgatcccaatgttagacttcccattttgagacgaccttcttct 266

                                                                       
Query: 62  tctgcaggtccacaccccacccatctatccagacaccttgaaaactgccttctcctagag 121
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgcaggtccacacccaacccatctatccagacaccttgaaaactgccttctcctagag 206

                                                                       
Query: 122 cctctctctctctctctctctctctct--------------------------------- 148
           |||||||||||||||||||||||||||                                 
Sbjct: 205 cctctctctctctctctctctctctctctctctctctctctctccctctctctctctctc 146

                                                                       
Query: 149 ---------------------cacacacacacacacacacacacacacacacacacaccg 187
                                |||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tctctcagacacacacacacacacacacacacacacacacacacacacacacacacaccg 86

                                                     
Query: 188 tgaatgcttgaatgtcttattcataactttccttctggccct 229
           ||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 85  tgaatgcctgaatgtcttattcataactttccttccggccct 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 722
Length adjustment: 9
Effective length of query: 310
Effective length of database: 713
Effective search space:   221030
Effective search space used:   221030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)