BAC Information

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BAC

Clone NameMSMg01-213O05
Chromosome17 (Build37)
Map Location 46,296,637 - 46,442,564
singlet/doubletdoublet
Overlap geneGtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10
Upstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp
Downstream geneBC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213O05.T7 (MSMg01no213_o05.b1)MSMg01-213O05.TJ (MSMg01no213_o05.g1)
ACCAG394726AG394727
length730832
length of high quality
(start - end)		145 (125 - 269)147 (62 - 208)
definitionCHROMAT_FILE: MSMg01no213_o05.b1 PHD_FILE: MSMg01no213_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:03 2005CHROMAT_FILE: MSMg01no213_o05.g1 PHD_FILE: MSMg01no213_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,296,637 - 46,296,781)(46,442,418 - 46,442,564)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTAGTCTCCATCTCTAAAAACTTTTTTTTCCCTGGCAATCCTGGTCTTA
AGCATACAGGATAGCACCCCGAAAAGACACCTACTTTCCTTTACTGAAGA
CCCAGGTAAATGGCTGATCTGCAAGGCTTTTCAAGTTTTGGTTCTTTTGG
TAAATAGCTGGAGTGGAAACTATCCAACGTGGACAGCGACTGCATGCTCA
ATAGACTCGTCTCCTTCGACGTGGAACTGTGCAGAAGTTATGGACTCAAC
CAGGTCTGAACTCCTTCACAGTACACCAGAGGTAAGTGCTCCTACCGTAC
CGCGTAGTATTTTTCAAACTCCGCTCCCTTTCTTGGCTATGTGTGAACAC
CCTGGTTGTTTGTGACCCACATCTAATGGACATACTGTGAGTCATGAGAT
ATCCTCGGCGCTGCAATTTGAACCCTGTCGTCCTGACTCTGTGCCCACCA
ATTCTGCTTTCTCCATTCAGAACCTATTGTGCCCCGTATACTGTTCTACG
CCGCTCTTATACTTCTGATATAACACGATAAACAGTTTGTTCTATTAAAA
CAAATTATTCAATTCCCCTGTTCGTTCTTAAAACTAAGCTTCTCTTCCCT
GTCATTATTTTCTCCTACTCCCTAGCTGTTTATGAACATTACTTGTTAAC
TCTATTATTTTCTACTTATGCTACTTGCGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGGACGTGGTGCTGGTGTACCGGCCAGGGCTGCCAAAT
GCCCTAGATGGGGTGACCTTCCGCGTGGAGCCTGGAGAGAAGCTGGGCAT
CGTGGGCCGCACAGGCTCCGGCAAGTCTTCCCTGTTTCTGGTGCTCTTCC
GGCTGCTGGAGCCCAACGCAGGGCGAGTGCTCCTGGACTATGTGGACACC
AGCCAGCTGGAGCTGGTCGAGCTCATGTCTGGTAGGCGGTAGATCAGGTA
GGAGGTAGGAGGGCAGTCCTCTCGTAAGGTGTTTTACAGCCAGTGTCTAT
GTTTTTTACCCACTCCACACCGCCCGGCATGTCTGTGTTCATCGTTCTCA
TTTTTGATGCTAACCCCCCACCTTCCTTGATACAAGATTTGGGTTGTATT
TGTTGTAACTTCTCTAACTTACATTGTTCCTGCCCCCAGACTTCTATCTA
GTGGCCCTTCTTATTCTTAATATCTTTTCGTGCTACTTGAATTTTTTTAG
TTATTCTTGTTTTCTCCAGGTGTACCCCTGTTATCTGGAACTCATATCAA
TCCGATACCCTCGCACTGGAGTTTATTTTCCCTATACCACTCTCTCAGTT
AATTCAAATCCTTATTTACTTCATTTCTAGATTTTTACCCTTTTATTTTT
TTACTTCTTTTTCTTTTATTCATTTACTTATCCTATCTCGCAGCTCCTCA
ATTCAGGGGCATCATTTGGTATTTTTACCTATCTCCTTCTCTTACTTCTT
TAACCATTCTATACACTCTTTCCTTACTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_o05.b1 MSMg01no213_o05.b1 CHROMAT_FILE:
MSMg01no213_o05.b1 PHD_FILE: MSMg01no213_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:03 2005
         (145 letters)



>mm_chr17_46296437_46296981
          Length = 545

 Score =  250 bits (129), Expect = 4e-71
 Identities = 141/145 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacacctactttcctttactgaagacccaggtaaatggctgatctgcaaggcttttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacacctactttcctttactgaagacccaggtaaatggctgatctgcaaggcttttcaa 260

                                                                       
Query: 61  gttttggttcttttggtaaatagctggagtggaaactatccaacgtggacagcgactgca 120
            ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 261 cttttggttcttttggtatatagctggtgtggaaactatccaatgtggacagcgactgca 320

                                    
Query: 121 tgctcaatagactcgtctccttcga 145
           |||||||||||||||||||||||||
Sbjct: 321 tgctcaatagactcgtctccttcga 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no213_o05.g1 MSMg01no213_o05.g1 CHROMAT_FILE:
MSMg01no213_o05.g1 PHD_FILE: MSMg01no213_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:03 2005
         (147 letters)



>mm_chr17_46442218_46442764
          Length = 547

 Score =  277 bits (143), Expect = 3e-79
 Identities = 146/147 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacgtggtgctggtgtaccggccagggctgccaaatgccctagatggggtgaccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 caggacgtggtgctggtgtaccggccagggctgccaaatgccctagatggggtgaccttc 288

                                                                       
Query: 61  cgcgtggagcctggagagaagctgggcatcgtgggccgcacaggctccggcaagtcttcc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cgtgtggagcctggagagaagctgggcatcgtgggccgcacaggctccggcaagtcttcc 228

                                      
Query: 121 ctgtttctggtgctcttccggctgctg 147
           |||||||||||||||||||||||||||
Sbjct: 227 ctgtttctggtgctcttccggctgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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