BAC Information

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BAC

Clone NameMSMg01-214B03
Chromosome17 (Build37)
Map Location 49,168,614 - 49,168,906
singlet/doubletsinglet
Overlap geneLrfn2
Upstream gene1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream gene1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6, EG668470, Rftn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214B03.T7 (MSMg01no214_b03.b1)MSMg01-214B03.TJ (MSMg01no214_b03.g1)
ACCAG394849AG394850
length706826
length of high quality
(start - end)
294 (116 - 409)75 (125 - 199)
definitionCHROMAT_FILE: MSMg01no214_b03.b1 PHD_FILE: MSMg01no214_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:16 2005CHROMAT_FILE: MSMg01no214_b03.g1 PHD_FILE: MSMg01no214_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTC
TGTGTCTTCTCCCATGGAGGCACAGAGGGGCACCAGAGTAGCTGAGAGAA
GATGGTGTTTCCGCAGCCTGACTCTGGGCACACCGCTTCAGTCCCCAGAA
TGGAACTTCCTCACTGGCCTGTAAACTCCAGACACTCAGTGCACGCCACC
TGCCACTTTTCCTGCTTCCAAATGACCCTTCATCCCCTGGAAAGCTTGCC
TTCCTCCAGGGCCAGAAGGCCATGGTCAGGTACCCCATTGTCTCCCCCAC
TTTTTTCTCAGAACTTGAACCCTAGAGCCGCTGGCAAAGCTGGCATCTTG
TCTATCTCCACTCACCCTAAACCCACTCACCCTTCCTGGGGTCACAGGGC
TTCTCAGGCAGGATTGTTCTCCAAGGGTTCACCTTGACCTTTGGTGGAGT
CTCTTTCTAATGAGGACACTGAGTTCTATTGGTGATGGGGGCCATTTAAC
AAGCACTTATGTGTGCCAGCTCTCTGGGGGATGCTGGGTCAGCTCCTCTG
AGCATCCAGTAGCCCCCAGGAACTACACAGAGTGCATAGTCTTCAGCCCT
ACGGTGTGTTGGGTAGAGTCACCATCCGGTAGCGGAAATGAGGATAGCAA
CATGGTCTGGGGATGGATAAGGACTCCTGGATGCCCAGAGCTAGAAACGG
GATCCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTAACTGAAACCACACCGGAGCC
ATCACCGATAGACTTCTTCTACGGCAAGAGTGAGGAAACCACATCTCTCA
TGTAGGTAACACTGCTCAAATCTGCTCTCTGTCGTGTCCTTTCTCCATTG
GNACTACCANCCAGTGCTTGCTCTACCANTAACTGCTTCTGCCAAACACC
CTGGTAATCTCTCACAATAAACACAAATGTGGTCTAATATCTTCTTAAAA
AAACCCCTGTTTTCTCTCNTTTCCTTTTTTNAAANNNATGGTTTTTATCT
AACTGCACTGGGACCAAGNAANCTCAATCTCCCCCCCCCCCCCCCNNNNT
TCACCTTCTTTTTAAAATAATTTTTATTTTTTTTTGTTCCCCCCTNCTCC
CCCCCCCAAAAAAAAGGGACGAGTATTAGGTTGTTTTNNNNNNNNNNNNT
TTTATTTCACAAAAGCCTGCCCCAGAAATCAGAATGTTAAAAGGGAATTG
CCCTCGCCGACACCAANNNNNCNGNNATGAGGAGAGAAGGCGGCTGNNNN
NGGCNNATGGNNNNNNNNNNNNNNNNNNNTNNTNNNNTNNTNNTTTANNT
AAGAGGACGGGGAGATTTTGTCNNTNNNNCNCNTCTTCTCTCCCTTCCTC
TTTTTATTTTTTTTCCTNCTTACTTCCCACTACACACCGGCGGAGGAAGA
GAATTGAGTTCCTTCTCAGCNNNNNNNATAGNNNNNNNCCNNNNNNNNNN
TCCTATTCAGGGCGGAACGACAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_b03.b1 MSMg01no214_b03.b1 CHROMAT_FILE:
MSMg01no214_b03.b1 PHD_FILE: MSMg01no214_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:16 2005
         (294 letters)



>mm_chr17_49168414_49169107
          Length = 694

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctgactctgggcacaccgcttcagtccccagaatggaacttcctcactggcctgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gcctgactctgggcacaccgcttcagtccccagaatggaacttcctcactggcctgtaaa 434

                                                                       
Query: 61  ctccagacactcagtgcacgccacctgccacttttcctgcttccaaatgacccttcatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctccagacactcagtgcacgccacctgccacttttcctgcttccaaatgacccttcatcc 374

                                                                       
Query: 121 cctggaaagcttgccttcctccagggccagaaggccatggtcaggtaccccattgtctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cctggaaagcttgccttcctccagggccagaaggccatggtcaggtaccccattgtctcc 314

                                                                       
Query: 181 cccacttttttctcagaacttgaaccctagagccgctggcaaagctggcatcttgtctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 313 cccacttttttctcagaacttgaaccctagagccgctggcaaagctggcatcttgtctac 254

                                                                
Query: 241 ctccactcaccctaaacccactcacccttcctggggtcacagggcttctcagg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctccactcaccctaaacccactcacccttcctggggtcacagggcttctcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)