BAC Information

Click to search

BAC

Clone NameMSMg01-214D24
Chromosome17 (Build37)
Map Location 52,623,352 - 52,681,348
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043452, Satb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214D24.T7 (MSMg01no214_d24.b1)MSMg01-214D24.TJ (MSMg01no214_d24.g1)
ACCAG394962AG394963
length763757
length of high quality
(start - end)		321 (46 - 366)309 (442 - 750)
definitionCHROMAT_FILE: MSMg01no214_d24.b1 PHD_FILE: MSMg01no214_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:31 2005CHROMAT_FILE: MSMg01no214_d24.g1 PHD_FILE: MSMg01no214_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,623,352 - 52,623,664)(52,681,040 - 52,681,348)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGATTTTGTGAGGATGTTAGTGAAACTTCTATGGTTCCCTTACAA
GTGCTTTCATGTACAGATAAGACTTTCTACTCTTAGCAACATTTTAGCAG
TGTCTAACAAAACTAGGTAGAATCCATTTGTAGTGCCCAACAGTGGTCTA
TATTTAGACTTTTATTAAACAGAGCATGTTCATTCTACACAACACAGAGA
TAGGTCTAATTGAGGTTCTATTAATCCTTTATCTATCCGACTATGAGTCT
ATGTATAAGTCGAAGTACTAAAAAATAATAACTCAAAGGGGTCTGCAACC
CTATAGGAGAAACAATATTATTCTAACTACCACCCTAAAGAGCTTGTGTC
TCTAGTTGCATATGTAGCAGAAGATGTCTAGTGGAACATCAATGGTCTTG
CAAAGAATATATGCCCCAGTACAGGGGAATGCCAGGACCAGGAAGTGTGT
GGGTTGGGGAGCAGGGTGGGGGGAGGGGACTTTCCCCTTCTCCCCTCCCT
TTCCCCCTCTCCTTTATTTTCCTCCCTTTTCCCCTCCTTTTTCCTCTCTC
TTTTCTCCCCTTTTTTAACCCTCTTTTTATTTCTACCCGTTTTTTCCCCC
CCCCCCTCCCCCTTTTTTTTCCCCCCCCCTTTTTTTTCTCCTTATTTCTT
TACACCCCAACTTTAACGCTTCATTGTGTTAATTTTCCCTCCCCCTTTTT
TTCTCCCTCCCCN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCACCAGCCTCAAGAGGGGGAA
ACCACATTAAAATCAAGAAAGGTTGACGCAAACATCAAAACATACATTGA
GGTCTAAGACATCCAATGAATAGTTGTTAGCATTGAAGGTTTCATAGTGA
CTTGTAATATTTTTTGGTCTCTAATTTGCCAATGACTAACAAAACAGATG
AGCATATTTCATTCTCAGCCTTTTCTGAAATGAAGATAAAACAGAGAAAG
AGCTCCATCCTCTTTATTCTGACCTCAGAATCCACCCCCATCCTTAAAAA
TACTGCTTTCTCCAATTCTCATTTATACACCCCCTCCCCTCAAGGAACTG
ACCCATCTATTTGTAGTCAGATAAACTATAAATGATAAAGCCAAGTAGCA
TTTATCTGATATTGGTATTCCATTGGGCCTAGAGAATAATCAAAGCTCAT
AATTTTCCAACCCACAGAAGCTCTGACCTACATGTGGCAGGATGTTCAAA
ATGATAATGAATGGGTTGATTGAGGCATCAAATACGGTTTTTATAATGTA
ATTTATTTCTGTATGGTTGCTTTCATAGACATGTATTGCAAATCACTATA
CAAGTCATCAGAGTCTATCCAGCAAATACAATTCATCGCTGTAAAAATGC
AATTGCATATATCAAGAAACTGCAGTGTCGTGGAGCTGAAAAAATGACTT
TGAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_d24.b1 MSMg01no214_d24.b1 CHROMAT_FILE:
MSMg01no214_d24.b1 PHD_FILE: MSMg01no214_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:31 2005
         (321 letters)



>mm_chr17_52623144_52623864
          Length = 721

 Score =  520 bits (269), Expect = e-152
 Identities = 302/313 (96%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcagattttgtgaggatgttagtgaaacttctatggttcccttacaagtgctttcatgta 68
           ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 209 tcagattttgtgatgatgttagtgaaacttctgtggttgccttacaagtgctttcatgta 268

                                                                       
Query: 69  cagataagactttctactcttagcaacattttagcagtgtctaacaaaactaggtagaat 128
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 269 cagataagactttttactcttagccacattttagcagtgtctaacaaaactaggtagaat 328

                                                                       
Query: 129 ccatttgtagtgcccaacagtggtctatatttagacttttattaaacagagcatgttcat 188
           |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 329 ccatttgtagtgcccagcagtggtctatatttagacttttattaaacagaacaagttcat 388

                                                                       
Query: 189 tctacacaacacagagataggtctaattgaggttctattaatcctttatctatccgacta 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 389 tctacacaacacagagataggtctaattgaggttctattaatcctttatctatccaacta 448

                                                                       
Query: 249 tgagtctatgtataagtcgaagtactaaaaaataataactcaaaggggtctgcaacccta 308
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgagtctatgtataagtccaggtactaaaaaataataactcaaaggggtctgcaacccta 508

                        
Query: 309 taggagaaacaat 321
           |||||||||||||
Sbjct: 509 taggagaaacaat 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no214_d24.g1 MSMg01no214_d24.g1 CHROMAT_FILE:
MSMg01no214_d24.g1 PHD_FILE: MSMg01no214_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:31 2005
         (309 letters)



>mm_chr17_52680840_52681548
          Length = 709

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtagcatttatctgatattggtattccattgggcctagagaataatcaaagctcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 caagtagcatttatctgatattggtattccattgggcctagagaataatcaaagctcata 450

                                                                       
Query: 61  attttccaacccacagaagctctgacctacatgtggcaggatgttcaaaatgataatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 attttccaacccacagaagctctgacctacatgtggcaggatgttcaaaatgataatgaa 390

                                                                       
Query: 121 tgggttgattgaggcatcaaatacggtttttataatgtaatttatttctgtatggttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgggttgattgaggcatcaaatacggtttttataatgtaatttatttctgtatggttgct 330

                                                                       
Query: 181 ttcatagacatgtattgcaaatcactatacaagtcatcagagtctatccagcaaatacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcatagacatgtattgcaaatcactatacaagtcatcagagtctatccagcaaatacaa 270

                                                                       
Query: 241 ttcatcgctgtaaaaatgcaattgcatatatcaagaaactgcagtgtcgtggagctgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttcatcgctgtaaaaatgcaattgcatatatcaagaaactgcagtgtcgtggagctgaaa 210

                    
Query: 301 aaatgactt 309
           |||||||||
Sbjct: 209 aaatgactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |