BAC Information

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BAC

Clone NameMSMg01-215P04
Chromosome17 (Build37)
Map Location 25,879,346 - 25,879,650
singlet/doubletsinglet
Overlap geneBC052484
Upstream geneSepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1
Downstream geneMsln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215P04.T7 (MSMg01no215_p04.b1)MSMg01-215P04.TJ (MSMg01no215_p04.g1)
ACCAG396012AG396013
length724834
length of high quality
(start - end)		305 (52 - 356)---
definitionCHROMAT_FILE: MSMg01no215_p04.b1 PHD_FILE: MSMg01no215_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:44 2005CHROMAT_FILE: MSMg01no215_p04.g1 PHD_FILE: MSMg01no215_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XAGTCATCCTGGAGACCCAGCTGTGCAGCGAGGTTGGCCAAGCAGCTGAG
CTGAGCAGGGGGTAGAGCGCAAGCAGCAGGTTACTGTCTGTCCAGTGTGG
ACCGGCCCTGGTGGGACACTGCTCCGCCCCTACCCCCCTCAGCAGAAGGC
ATGCTTTAAGGAGGAACTGGAGACATGCATGAGAGAAAAACTGCAGTAGC
ACAGAGTAGAGAAAGGCAGGTAGAAAAACCAAGGCCCGAGACAGACAGTC
CTGAGAAGCAAATGGACGAACTGAAGTGAGAAGTCAGAGTCGAGCAGGTG
CGATGTTTTATGCCTCTGACCCCCCCCCTCTAGATACACACACAGGGGGA
TCTTTGTGAGTTGGAACCCAGCCTAGACTACAAAGTGAGTTCAAGAGCAA
CCAAGATTATGTAGAGACCCTGTCTCAAAATTAAAAAAAATAATAATCCA
AAGATGTTTAAATTTGAGCTGTTCAACTGTGTGTAAGTTCTCACACTCAC
CCAAGGTGAGCGTCCCCACTGAGGGTTAACGTGGCCAGCTTTGCCTGCAT
AGTACTCACCCCTTCTTCCTTTCCTTTTTCACCTTCTTTCCCCTCTTTCT
TCCCCTCACCTTCCCCTCTTCCACTCTCCCTTTCTTTTCCTTTGCCCTCC
TTTATTTATTTCTTCTCTCCCCTC

CGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGAACAGGCTGGGCACGAAC
TCAGAGAACTGGCCGCTTCTGCCCTCCCCATGGAGGGTTTAAAGGTGGGG
ACCACCATTGTGCCGGGTCTTTTTTTTTTCTTTTTAAACTAAAAAAGAAG
GTGGCTCATTGCTCTGGTGTATAAAAAAAACAGTTCCGGCTTCTTTTTGT
GTCTGATATTTGTGGCATCCTCCCCACTGACTCTTGATTAATTCCCTCCC
TTCACCGTTAAAAGGTTGCCCACTCTTCCTCCTCCCTTTTCTTTTTTGTT
TTTTTTTGGGACCCACCCCCTAACAACCCACCCCTTCTGGTATAATTTTT
TTTTATTCCCCCCCCCCCCCCCCCCCCTGGGCCGGGGCCTCTATTCTTTT
TTCCTTTTTCTTCCCCAATCCACCTTACAAAAACAAAAAATCCCTTTTCC
TCTTACTATCCCCCTTATCTCCCTCCCTTATCTTCTTATTCCCACCTTTG
TTACCTTTCTCCCCCATATCATCCCTCCTGAAAGAACTAAGTTCTATCCT
CATCACTTTTCCCCCCTCTCCCTTCTTGCCTTCCCTTCTTTTTCCTCCTT
TCCTTCATACCAAAAACGCTTTCCATATTAGCTGGCGCATTCCCGCTACG
TTTCACTCGTCTCACTCTAACATAAACTTTAATGTAAATATCCCATCTAT
AGCATGCCCGCGTCGTTCTCACACATATCTCCACCCTTTACAACTTTACC
CACTATCCCGATTTTCTTTCCCTCACCTCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_p04.b1 MSMg01no215_p04.b1 CHROMAT_FILE:
MSMg01no215_p04.b1 PHD_FILE: MSMg01no215_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:44 2005
         (305 letters)



>mm_chr17_25879146_25879850
          Length = 705

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcatcctggagacccagctgtgcagcgaggttggccaagcagctgagctgagcagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtcatcctggagacccagctgtgcagcgaggttggccaagcagctgagctgagcagggg 446

                                                                       
Query: 61  gtagagcgcaagcagcaggttactgtctgtccagtgtggaccggccctggtgggacactg 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagagggcaagcagcaggttactgtctgtccagtgtggaccggccctggtgggacactg 386

                                                                       
Query: 121 ctccgcccctacccccctcagcagaaggcatgctttaaggaggaactggagacatgcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctccgcccctacccccctcagcagaaggcatgctttaaggaggaactggagacatgcatg 326

                                                                       
Query: 181 agagaaaaactgcagtagcacagagtagagaaaggcaggtagaaaaaccaaggcccgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagaaaaactgcagtagcacagagtagagaaaggcaggtagaaaaaccaaggcccgaga 266

                                                                       
Query: 241 cagacagtcctgagaagcaaatggacgaactgaagtgagaagtcagagtcgagcaggtgc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 cagacagtcctgagaagcaaatggacgaactgaagtgagaagtcagagacgagcaggtgc 206

                
Query: 301 gatgt 305
           |||||
Sbjct: 205 gatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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