Query= MSMg01no216_c01.b1 MSMg01no216_c01.b1 CHROMAT_FILE:
MSMg01no216_c01.b1 PHD_FILE: MSMg01no216_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:00 2005
(544 letters)
>mm_chr17_43277834_43278777
Length = 944
Score = 919 bits (475), Expect = 0.0
Identities = 526/543 (96%)
Strand = Plus / Plus
Query: 1 attctgggtcatggaaatatcattcaccattgatgaattttatttttatgttcatttttc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgggtcatggaaatatcattcgccattgatgaattttatttttatgttcatttttc 260
Query: 61 agctccatctctacttgttaatgtcgctgccatgttcctgtgctatggtaaatctcttga 120
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctccatccctactccttaatgtcgctgccatgttcctgtgctatggtaaatctcttga 320
Query: 121 tttaaaccaaaagctttccttacttcctttcagaatttcacttacgttattctctctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tttaaaccaaaagctttccttacttcctttcagaatttcacttacgttactctctctcct 380
Query: 181 ctccctcacttactttgaataatcttggaagaaaacatgtctgcatagaaaaggactttc 240
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccctcacttacaatgaataatcttggaagaaaacatgtctgcatagaaaaggactttc 440
Query: 241 tagttagttcataatgttgttccacctatagggttgcagatccatttagctccttgggta 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttagttcataatgttgttccacctatagggttgcagatccatttagctccttgggta 500
Query: 301 ttttctctagctcctccattgggggccctgtgatccatccaatatctgactgtgagcttc 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 501 ttttctctagctcctccattgggggccctgtgatccatccaatagctgactgtgagcatc 560
Query: 361 cacttctgtgtttgctaggcccctgcgtagtctcactagagactgctatatcagggtcct 420
||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||
Sbjct: 561 cacttctgtgtttgctaggccccggcatagtctcactagagacagctatatctgggtcct 620
Query: 421 atcagcacaatcttgctagtgtatgcaatggtgtcagcgttcggaggctgattatgggat 480
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 621 atcagcacaatcttgctagtgtatgcaatggtgtcagcgttcggaagccgattatgggat 680
Query: 481 ggatccctggatacatcactggaaagagaggcccattggacttgcaaactttatatgccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 ggatccctggatacatcactggaaagagaggcccattggacttgcaaacttgatatgccc 740
Query: 541 cag 543
|||
Sbjct: 741 cag 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no216_c01.g1 MSMg01no216_c01.g1 CHROMAT_FILE:
MSMg01no216_c01.g1 PHD_FILE: MSMg01no216_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:00 2005
(474 letters)
>mm_chr17_43433412_43434286
Length = 875
Score = 864 bits (447), Expect = 0.0
Identities = 465/471 (98%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 5 aagg-aaacttttttgactcagacagctagctgcccacttggattttagtgcatctttct 63
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaggaaaatttttttgactcagacagctagctgcccacttggattttagtgcatctttct 616
Query: 64 aaatctcagtagaatcccacagtcacagagctgcaccaagaagtccaaatgacatccaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaatctcagtagaatcccacagtcacagagctgcaccaagaagtccaaatgacatccaaa 556
Query: 124 cctcaccatgtggttttggatctgctgcgtgtaggagctctgactggatccaggcaaagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cctcaccatgtggttttggatctgctgcgtgtaggagctctgactggatccaggcaaagc 496
Query: 184 taacgggacatctccacatcaccactgcccctcagcatcagcttccctagccaggcagag 243
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 495 taacaggacatctccacatcaccactgcccctcagcatcagctgccctagccaggcagag 436
Query: 244 tacagtacagtccctgtagtacgctgcggtaagagcaccccagtcaacaagcacttactt 303
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tacagtacagtccctgtagtatgctgcggtaagagcaccccagtcaacaagcacttactt 376
Query: 304 gctctctcacagaaattaacgctctgcctgaggcctctgagagagcaattgcagcttggg 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gctctctcacagaaattaatgctctgcctgaggcctctgagagagcaattgcagcttggg 316
Query: 364 acgggtccagttgtgtgaaggcagcagttctgggggtcaaggcaggagggaggaaaccac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acgggtccagttgtgtgaaggcagcagttctgggggtcaaggcaggagggaggaaaccac 256
Query: 424 gtatagctgtcttcgcaggcacactccaggaacccttttcggcttctgcag 474
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtatagctgtcttcgcaggcacactccaggaacccttttcggcttctgcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 875
Length adjustment: 10
Effective length of query: 464
Effective length of database: 865
Effective search space: 401360
Effective search space used: 401360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
