BAC Information

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BAC

Clone NameMSMg01-216I04
Chromosome17 (Build37)
Map Location 45,289,109 - 45,289,360
singlet/doubletsinglet
Overlap genenone
Upstream geneClic5, Runx2, Supt3h, 4930564C03Rik
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216I04.T7 (MSMg01no216_i04.b1)MSMg01-216I04.TJ (MSMg01no216_i04.g1)
ACCAG396356AG396357
length719746
length of high quality
(start - end)
256 (108 - 363)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no216_i04.b1 PHD_FILE: MSMg01no216_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:32 2005CHROMAT_FILE: MSMg01no216_i04.g1 PHD_FILE: MSMg01no216_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCATTCTTTTTCACCAATAATGAGATACCTACAGCTAATTAGA
CATTAGGGGCTGCATAGGATATGAAGGTGCAGGTAGAGTTTCAGGGCTGC
CCAGTCTAGTCCACACATACTGTGTGCCACCCACCAACCACTGAGCCCTT
GAACACAGCATGGTGCCTGCCTCAGGACTATGCAGCCCAGCCCAGAGACA
GCCAGGGCACCGCCATCCCTTACTGCCTGCGCAGGGAGAGAGGGTCAGAT
GGCCGGTGAAGTCAACCCTCTGAGCTGTTGCTGAGCGGCTGTTTGCCTCT
CTTCCTTCCAGAATCTTACAGCGAGCGCACACCACGTAGGGTACCAAGCT
GGGGAAGATGGAATCCCTTGTTCTGGGAACACTGATCCTTGGCAGGAGCC
TCTTGCAAGTCTGGATCCAGGCCGGCAGACTAAGAACCGTGGCGCAGGGG
TGACCATGTCACAGGTTTGAAAGCAGGGAAAGAAGGATTTCAGATTAGAA
GAGCCCCCCAAAATAAAATCCCAGGGGAAGACTCCACGAAGCCTGTGGCA
GGCCGGTGCCACGGCGCTTTGAGATAGACAAGAGTCATCTGTGTGGTAAA
GATGGGAGCTGAGGAGGGGGCCGAGGGTCACCAGTCACTGTTCCGATCTC
AGAAACAGCGCTGCCTGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGACACTTTATGCCTCCTTTCTTC
CTACCACAGAGAGACGTTAAATTTCATCAACTATTTTTTTCTCTATGTTT
AACAAAATGATTATTTTTATCCTTCATTCTTTTAATGTAATGTGGTATGT
TTTTTAGCTACATGTTATAAAGAGGCTCCTGTGAGCACTTGGTTGACACC
ATTGCCATTGGGGGGGGGGTGATCTTTTGATGTGCTGCTGGATTTGATTA
ACCCCAAAGCATTGGTTATAGCTGGAACACAAAAAGGTAAATCAAATAGC
AATTCTTTGCCTTCAGGTATTTGTATTGACCGCCCCACACAAATGAGAGT
TCATGGCTGGTACAGTTCAGGCCGCCTCTGTAGATAAAAATAATAACTCC
TGCCAGTGTGGCACTTTTTCCATATATTATAGATGTGTGTGCTGCTTGGG
ATAATAATAGACCTCTTTATTTTGACTTTTTTAAAGTTAGCTGGATAACA
GCTTTATATTCAGGGCACTAATTGATTAAATTTTAATGAATTCAACTTTC
TACTATATTAAGGCGGCACCTGTCATTCACTTGCGCACCTATATACTTCT
TCTGCCCCTGACACTGCATATATTTCAACTTTTTTCAACACATCCATTTT
CTTGGTTCCTACAAAAACATTTCTCCTTCTTTTCTCAACCCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_i04.b1 MSMg01no216_i04.b1 CHROMAT_FILE:
MSMg01no216_i04.b1 PHD_FILE: MSMg01no216_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:32 2005
         (256 letters)



>mm_chr17_45288909_45289564
          Length = 656

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctgcataggatatgaaggtgcaggtagagtttcagggctgcccagtctagtccacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggctgcataggatatgaaggtgcaggtagagtttcagggctgcccagtctagtccacaca 393

                                                                       
Query: 61  tactgtgtgccacccaccaaccactgagcccttgaacacagcatggtgcctgcctcagga 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 392 tactgtgtgccacccaccaaccactgagcccttgaacacagcatggcgcctgcctcagga 333

                                                                       
Query: 121 ctatgcagcccagcccagagacagccagggcaccgccatcccttactgcctgcgcaggga 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctttgcagcccagcccagagacagccagggcaccgccatcccttactgcctgcgcaggga 273

                                                                       
Query: 181 gagagggtcagatggccggtgaagtcaaccctctgagctgttgctgagcggctgtttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gagagggtcagatggccggtgaagtcaaccctctgagctgttgctgagcggctgtttgcc 213

                       
Query: 241 tctcttccttcc 252
           | ||||||||||
Sbjct: 212 tttcttccttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)