CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAATCTCAGAATAGCTAAATGTAAATGCAGCTCTGTGGACCAAG
CCCAAAGTCACCCCACTCTAACAGGACTGAGGCAGTTCTGGGAATCCGGG
AATCACAGTGTCATCGCTGAGATGACATAAGAAAGACGAGGTGGAAAAGC
AGTTAGCCATCAGCTACCACAGAATTCCACTTCAGGAGTTTCATAAACAA
TCTAGCTTCAATCTCAGATGAGCTTAAACTCTTACAAAATGAAATAGCCC
AGCAAAAGAACCTTAGCATTGTAACCCACACATCCCTTTCTCAGATGGTC
CAATTCTGAACTCCGAGAAATATTATGCTCCTTGCGCGGGCTTATATGTA
GACTCTTCAAGGCTGCAAGTCACTCCTGGGACCTCCTAGCAGGAAAGTCT
GCATCTCTGGTAAAGTGGCTTCATTCTCCTATCACCCGGATCATTTCCTG
CAGACACCAGTGGTCAGAGGGCTGGAGACCAGAGGTAGAGCAACTGTCTC
ACCTTGACTTCATCCCTAACTCGTCATTAAGCCAAATATCACGGTCACTA
AAGCCCCCACCTCCCCTTTCAGTTTACAGCGCTATCTAGAAAGATTATGG
AATGCGCCAGAAGGAAACAGAGTAACCCATTACTCTTTTCATTGGAGAAG
TGTTTTAGTATCAGTGAGAGTGGCATGATATCTTTAATTGGTT

GGCGGCCGCCTGGNCGATCGGTACCCGGGAACNANAGAAGGATCTTTGCG
NCACCTAGGGGAAACCAGGCTGACATCAAACTCAGAGAACTGCCTGCCTC
TGTCTTCCGTGCTAGGATTAAAGGCGTTTGCCACAATGCTTGGTTAATCC
CAGCGTCTTTGAGGGTCAATATAGAGACCTAAAACTAGAAGGTAGAGGTT
GATAGAAAAAAACAGGTTTCCTCAGCAGTTTGGGTTATTTTTTAAAAGCA
AAACAATTCCTTTGGTATCCTTGGAATCGGCTCTTGCCCATACAGCATCA
GGGATTTCATGATTTTTGCATAACTTGNGGATCTTTCTCAAATCTCGATA
TTGATGCGCCCACCGAGTCCCAAGGCACAGCACAGTCCCTTGAGTCTGCC
TCACGGTAGCTCCCAACCTTGGTAATATGTTGGCAAGAAGTGGGAAGGCT
TCATAAAAATACAAGTTGGAATTCATGAACATTGAGTTTGGGGCTCAAGA
GATGTTTGATGGAAAAAAGAGGAAGATGTCTACTAGCATCATCTTGTGAA
GAGTTAAGAAGCCGAGAAAGAAAGAAAACTGAGAAGTGGAAATCAAGAGC
AGTAATTACGAAGAACTTGGACTCTCTCCGGCTTCTAAGATTCTTGTTAT
TTTTCGACTCGGCAGGAAGAACGACACTGCAACAGGATCCTTTCTGCACA
CGTTTATTGGCAGAGCTTGATTG

Query= MSMg01no216_i07.b1 MSMg01no216_i07.b1 CHROMAT_FILE:
MSMg01no216_i07.b1 PHD_FILE: MSMg01no216_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:33 2005
         (694 letters)



>mm_chr17_80789724_80790817
          Length = 1094

 Score = 1290 bits (667), Expect = 0.0
 Identities = 685/691 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaaatctcagaatagctaaatgtaaatgcagctctgtggaccaagcccaaagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ggaattcaaaatctcagaatagctaaatgtaaatgcagctctgtggaccaagcccaaagt 835

                                                                       
Query: 64  caccccactctaacaggactgaggcagttctgggaatccgggaatcacagtgtcatcgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 caccccactctaacaggactgaggcagttctgggaatccgggaatcacagtgtcatcgct 775

                                                                       
Query: 124 gagatgacataagaaagacgaggtggaaaagcagttagccatcagctaccacagaattcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gagatgacataagaaagacgaggtggaaaagcagttagccatcagctaccacagaattcc 715

                                                                       
Query: 184 acttcaggagtttcataaacaatctagcttcaatctcagatgagcttaaactcttacaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 acttcaggagtttcataaacaatctagcttcaatctcagatgagcttaaactcttacaaa 655

                                                                       
Query: 244 atgaaatagcccagcaaaagaaccttagcattgtaacccacacatccctttctcagatgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atgaaatagcccagcaaaagaaccttagcattgtaacccacacatccctttctcagatgg 595

                                                                       
Query: 304 tccaattctgaactccgagaaatattatgctccttgcgcgggcttatatgtagactcttc 363
           ||||||||||||||||||||||||  |||||||||||| |||||| ||||||||||||||
Sbjct: 594 tccaattctgaactccgagaaataacatgctccttgcgtgggcttgtatgtagactcttc 535

                                                                       
Query: 364 aaggctgcaagtcactcctgggacctcctagcaggaaagtctgcatctctggtaaagtgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaggctgcaagtcactcctgggacctcctagcaggaaagtctgcatctctggtaaagtgg 475

                                                                       
Query: 424 cttcattctcctatcacccggatcatttcctgcagacaccagtggtcagagggctggaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cttcattctcctatcacccggatcatttcctgcagacaccagtggtcagagggctggaga 415

                                                                       
Query: 484 ccagaggtagagcaactgtctcaccttgacttcatccctaactcgtcattaagccaaata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ccagaggtagagcaactgtctcaccttgacttcatccctaactcgtcattaagccaaata 355

                                                                       
Query: 544 tcacggtcactaaagcccccacctcccctttcagtttacagcgctatctagaaagattat 603
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 354 tcacggtcactaaagcccccacctcccctttcagcttacagtgctatctagaaagattat 295

                                                                       
Query: 604 ggaatgcgccagaaggaaacagagtaacccattactcttttcattggagaagtgttttag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggaatgcgccagaaggaaacagagtaacccattactcttttcattggagaagtgttttag 235

                                          
Query: 664 tatcagtgagagtggcatgatatctttaatt 694
           |||||||||||||||||||||||||||||||
Sbjct: 234 tatcagtgagagtggcatgatatctttaatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no216_i07.g1 MSMg01no216_i07.g1 CHROMAT_FILE:
MSMg01no216_i07.g1 PHD_FILE: MSMg01no216_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:33 2005
         (169 letters)



>mm_chr17_80741995_80742563
          Length = 569

 Score =  311 bits (161), Expect = 1e-89
 Identities = 167/169 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accgagtcccaaggcacagcacagtcccttgagtctgcctcacggtagctcccaaccttg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accgagtcacaaggcacagcacagtcccttgagtctgcctcacggtagctcccaaccttg 260

                                                                       
Query: 61  gtaatatgttggcaagaagtgggaaggcttcataaaaatacaagttggaattcatgaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaatatgttggcaagaagtgggaaggcttcataaaaatacaagttggaattcatgaaca 320

                                                            
Query: 121 ttgagtttggggctcaagagatgtttgatggaaaaaagaggaagatgtc 169
           |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaatttggggctcaagagatgtttgatggaaaaaagaggaagatgtc 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)