Query= MSMg01no216_n10.b1 MSMg01no216_n10.b1 CHROMAT_FILE:
MSMg01no216_n10.b1 PHD_FILE: MSMg01no216_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:01 2005
(291 letters)
>mm_chr17_15534134_15534823
Length = 690
Score = 472 bits (244), Expect = e-137
Identities = 279/298 (93%), Gaps = 15/298 (5%)
Strand = Plus / Minus
Query: 1 ggtgggcttttctaccctgaaatgtctcccatacgctaggatcaatgcttatttg----c 56
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggtgggcttttctaccctgaaatgtctcccatacgctaggatcaatgcttatttggaaa- 432
Query: 57 cccaaataaatgaataaaaccaggggcagatgaatgtattaagtgagatcaagaaccaat 116
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 431 ---aaataaatgaataaaaccaggggcagatggatgtattaagtgagatcaagaaccaat 375
Query: 117 tcacagtttatagactcccattatagccagagagagcgatggagagaaataatgcctaac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcacagtttatagactcccattatagccagagagagcgatggagagaaataatgcctaac 315
Query: 177 aataaaattaatactatttatacttggtattaagttctgtagtaacaattgataccatta 236
||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 314 aataaaattaaaactatttatacttggtattaagttctgtagcaacaattgatagcatta 255
Query: 237 tgtggaatgcatccttcttatttt---aggtggagtcaactcagaaagtaaatgaaat 291
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 254 tgtggaatgcatccttctta----ccaaggtggagtcaactcagaaagtaaatgaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space: 192042
Effective search space used: 192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no216_n10.g1 MSMg01no216_n10.g1 CHROMAT_FILE:
MSMg01no216_n10.g1 PHD_FILE: MSMg01no216_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:01 2005
(580 letters)
>mm_chr17_15388399_15389378
Length = 980
Score = 888 bits (459), Expect = 0.0
Identities = 539/583 (92%), Gaps = 30/583 (5%)
Strand = Plus / Plus
Query: 1 tgttctaaaggcagggtgtggtataactcgactttcctgcatcctagctggacttaagga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tgttctaaaggcagggtgtggtataactcgactttcctgtatcctagctggacttaagga 260
Query: 61 cccaatgcatgtctgtgtgtactcccctgtactgtctgcagctcaaatcacccgctgcca 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agtaatgcatgtctgtgtgtactcccctgtactgtctgcagctcaaatcacaggctgcca 320
Query: 121 tgttcagctgctgctggaacatgggacagaactctgctgttgttgtgactccaacataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttcagctgctgctggaacatgggacagaactctgctgttgttgtgactccaacataca 380
Query: 181 gacctcttggagggcagacaggagcccaaatgagactcctgggaatttggcactgctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacctcttggagggcagacaggagcccaaatgagactcctgggaatttggcactgctcag 440
Query: 241 ctgcatgcttgatttctgtgtcaccatttccctcctcaaggctgttctatccagcaggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcatgcttgatttctgtgtcaccatttccctcctcaaggctgttctatccagcaggtt 500
Query: 301 ctaccctctaggatatagtaggatcctttttctcatctctctctctctctctctctctct 360
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ctaccctctaggatatagtaggatcctggttctcatctctctctctctctctctctctct 560
Query: 361 ctctctctctctctatatttttttttcccccccccctatatatat--atatatatatata 418
|| | | |||| |||||||| |||||||||||||
Sbjct: 561 ctatat--------atat-------------------atatatatgtatatatatatata 593
Query: 419 aaaaaaaatatatccacatatgtacacatatgtacacatcatgtatatatctgcttctct 478
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tacacacatatatccacatatgtacacatatgtacacatcatgtatatatctgcttctct 653
Query: 479 ggagtctatattcccatctttttttttt-ggctgtttgcttttagtatgcttgctttttg 537
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 654 ggagtctatattcccatctttttttttttggctgtttgcttttagtatgcttgctttttg 713
Query: 538 tctttctgtctttccccaactacagtgcaactttcccaggact 580
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tctttctgtctttccccaactacagtgcaactttcccaggact 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
