BAC Information

Click to search

BAC

Clone NameMSMg01-217D02
Chromosome17 (Build37)
Map Location 89,332,589 - 89,332,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneFshr, LOC100043904, LOC100043906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217D02.T7 (MSMg01no217_d02.b1)MSMg01-217D02.TJ (MSMg01no217_d02.g1)
ACCAG396805AG396806
length713761
length of high quality
(start - end)
316 (46 - 361)32 (77 - 108)
definitionCHROMAT_FILE: MSMg01no217_d02.b1 PHD_FILE: MSMg01no217_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:35 2005CHROMAT_FILE: MSMg01no217_d02.g1 PHD_FILE: MSMg01no217_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCAGGTCAGGCCATATGCTATGGACAAATCTAACTAGTACCAAG
CTGACAGGACCATTCCTTTACTTGACCGATTTTCACAGCAGCACTTTGAG
AAAGAAGTCCTTGAACACTCCCCACCTTTCTCTCGATGGGTTACAGCTAT
CTGATTGATTTTAGACGTGTGGATTAACTATATACCCCAAAGTACTGTGA
TGGTGCTGGATTGGATACTTCTGCCTTTCCCATTCCCTGGCAAGTCTGGG
GTTTCAGACACAAACCCCTGCTGCTAAAGTTATGGGTCAGAGCCTGAGAC
CTTGATTAGGCCTTTTTTTTTTCTGCCCCCCCCCCCCGCCTAAAAGGGTC
AGATCTCAGTTCTAACTTCTTACGACCCCACCAAAATCTCTTATTCTCAG
GAGGCAGTTACGAATATCTCAGCTGCCACACTTATAAGTGAGAGGGAGGA
AGTCTATAGGAGACCCCATTTTGATCTGAACCTTGACTGAACCCAGCTCT
TTATCTGAGCTCCCTGAAAATCATTCCTGAGTGACTATGAATAATCCAGC
TTGTGTGGTCTCCCCACTTCATTTGTTCCCCGCGAACACTTGTCTAGAAC
TCTTCTGGTCCGTGATGGGGTAATTATTGGCTTAATTAACCCCTCCCTTT
GCTTTTTGATTTT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGTCGTAAGAGACTAGGAACTG
AGCCTAATGCTATAGACCTACAATGCCCCTGATTCAGGAGGCTAAGACAG
GAAGATTGTATGTTCAATTGTATATCCTGAAATTTAAATATAGACATACT
TAAATATAAATATGTATTTATATTTAACAGAAACATAGAAATAAACATAT
ATGTATATATACACATATATACTTACTCACTAAGCAATAACAATAAATTG
GAAAAATTGCCTAATATATAGCTATGGATATGGATAGATATAGATAAAGA
TGGCAGAGGATATATCTTTTTTATTTTTACCCCCTCCCCCCCATGATCAA
GGCCTTGAATTCACCACAAAACACCCACAGAAAGAGATAAAAAGTGCACT
TTATATGCTGTTGGTATCTCAGTGTTGATAGTTGAAAGTGTTCAACTTTT
CATTATGATGTCTAGGTAAAAGGGTTCTGGGCATAATTTGATTCCGTGTG
AAGATACCCTATTGACATAAAAAAATAGCCTTCCCTTTTCTGCACAATGT
GACCTGCTTATTCAGATTTATTTTACTCCAATGTATGGACTACTTTGAAT
ACAATAATTATTATAATCTATATTCACTGCATATCTTTTCCTGCGACTAT
TTTGTGAGTGAAACATATTTTGTCTACCCATATGTAACCGGTATAATCTA
TCATGCTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_d02.b1 MSMg01no217_d02.b1 CHROMAT_FILE:
MSMg01no217_d02.b1 PHD_FILE: MSMg01no217_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:35 2005
         (316 letters)



>mm_chr17_89332385_89333100
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccaggtcaggccatatgctatggacaaatctaactagtaccaagctgacagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccaggtcaggccatatgctatggacaaatctaactagtaccaagctgacagga 264

                                                                       
Query: 65  ccattcctttacttgaccgattttcacagcagcactttgagaaagaagtccttgaacact 124
           ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccattcctttacacgagagattttcacagcagcactttgagaaagaagtccttgaacact 324

                                                                       
Query: 125 ccccacctttctctcgatgggttacagctatctgattgattttagacgtgtggattaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccccacctttctctcgatgggttacagctatctgattgattttagacgtgtggattaact 384

                                                                       
Query: 185 atataccccaaagtactgtgatggtgctggattggatacttctgcctttcccattccctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atataccccaaagtactgtgatggtgctggattggatacttctgcctttcccattccctg 444

                                                                       
Query: 245 gcaagtctggggtttcagacacaaacccctgctgctaaagttatgggtcagagcctgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaagtctggggtttcagacacaaacccctgctgctaaagttatgggtcagagcctgaga 504

                       
Query: 305 ccttgattaggc 316
           ||||||||||||
Sbjct: 505 ccttgattaggc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)