BAC Information

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BAC

Clone NameMSMg01-217D19
Chromosome17 (Build37)
Map Location 76,883,341 - 76,883,575
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrp3, 2810405J04Rik, LOC668787, LOC100043885, LOC100043886
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217D19.T7 (MSMg01no217_d19.b1)MSMg01-217D19.TJ (MSMg01no217_d19.g1)
ACCAG396834AG396835
length726710
length of high quality
(start - end)
239 (122 - 360)315 (385 - 699)
definitionCHROMAT_FILE: MSMg01no217_d19.b1 PHD_FILE: MSMg01no217_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:38 2005CHROMAT_FILE: MSMg01no217_d19.g1 PHD_FILE: MSMg01no217_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
CTGATTATCTACTCCTTATACTCCAGCTACTGCCTCATCAACTATAGTAG
AGAAATTATCTTGTTTTACCGCTAAAGATAGGCCATAGCTTTTATTCCAC
AAGGGGAAATCCAATTATGTTTTAAAGAGGCTATGTGAGCAATGCTGATA
TGAAATGCAGAAGAGATCTATTAGATTACCACTCTAAAGTCCTGGATGGA
TTTCTTCTAGCTCAGTAACTTTTTCATCATTTTCATAAGATACTAGTTAT
TAATTACTTGCATTCTTTTCATTACTAGAGATGTTTTACCTTGTAATCAT
TTTTTGTTATTCTATACCCCCCATCAATCCCTCACTTATTTAAAAGATTT
TTAAAAATATAAACCACCCAATTCTTAGAAACAATTTATAGGTTGAGGAT
TACCATGTAAATGTTTTACATGCACTCCTAGGAATTAAAAAGCTAAACTA
TCATTAAAAACAAAATAACTTGCTAGTATTTAAAGCATTTTTTCTGAGTA
TAAATTCAGGAAAATATCAATTTACTTCCCTCTTTAATCTAAGGCTGCCA
TTGTAGTTTTGTAGTGCTTGGCATCTCTCTGAAGTTCTTGATATATTCCT
CTACTTCTGCAAATATGATTTTCATATCTACTGCTTGCATTTGATCTTGG
AACAAAATTATTAAGTTTTGCATTTA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCGAATTCATACCCCATCTAGTCTAGAAGATGTAATGTC
AGGGATGCTGGATTAGACCCCGTCTCTGTCTTCAGGGAAGGAATCACTGA
CAAGTTATGTTTCTACCAGTGGATATATTCATACCCATGCTCACATAGGT
AGCCCTAATCAAGCCCAGTAAGTTATCAAGCAAATGCAAAGACAAAACAA
AATCATGAGAGTAGGATGGAGACTTAGGGTATTGTGAGTTTGGGAGGCAG
AGAGAAAGGAGAGAGGAATTATAGTGAGCAGTTAAGTTCATATATGAAGT
TGTCAACTATTTGTATAAAAACAACTCCCAACATAAGACCAACAGATATA
ATTTTGAGCAGTGTGTCACTGGAAAATATAGGGGATAAAAGACTACCCAC
ATCCCGCCAGAGATTCGGGGCTCTGGGCAGGTGGATGTGGGGGACTGACT
CATGCTCTCTACACTGCCCGGGTGAGAATGTGGCTGTGGGAAGCCATGGA
ACTCCAGTCTGCAGGAGTAGAGAGGGAGCGATCCAGGGTCTCTGGGACTC
ATGGTGGCCAGAGACTACAGTTCTCAGTTTTGGAAAAGCTGAGAAAAAGT
GGGGACCCTGGGGTCAGCTTGATCAGCCCCAGTGCCAAAGAGAGAATGTG
ACATGATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_d19.b1 MSMg01no217_d19.b1 CHROMAT_FILE:
MSMg01no217_d19.b1 PHD_FILE: MSMg01no217_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:38 2005
         (239 letters)



>mm_chr17_76883141_76883779
          Length = 639

 Score =  385 bits (199), Expect = e-111
 Identities = 226/235 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaagataggccatagcttttattccacaaggggaaatccaattatgttttaaagaggc 60
           ||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct: 435 ctaaagacaggccatagcttttatttcacaaggggaaatccacttacgttttaaagaggc 376

                                                                       
Query: 61  tatgtgagcaatgctgatatgaaatgcagaagagatctattagattaccactctaaagtc 120
           ||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 375 tatatgagcaatgctgatatgaaatgcagaagagaactgttagattaccactctaaagtc 316

                                                                       
Query: 121 ctggatggatttcttctagctcagtaactttttcatcattttcataagatactagttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctggatggatttcttctagctcagtaactttttcatcattttcataagatactagttatt 256

                                                                  
Query: 181 aattacttgcattcttttcattactagagatgttttaccttgtaatcattttttg 235
           |||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 255 aattacttgcattcttttcattactagagacgttttaccttgtaatcatattttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)