BAC Information

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BAC

Clone NameMSMg01-217N13
Chromosome17 (Build37)
Map Location 18,822,016 - 18,822,325
singlet/doubletsinglet
Overlap geneVmn2r-ps115
Upstream geneEG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070
Downstream geneVmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217N13.T7 (MSMg01no217_n13.b1)MSMg01-217N13.TJ (MSMg01no217_n13.g1)
ACCAG397230AG397231
length718718
length of high quality
(start - end)
314 (43 - 356)237 (127 - 363)
definitionCHROMAT_FILE: MSMg01no217_n13.b1 PHD_FILE: MSMg01no217_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:38 2005CHROMAT_FILE: MSMg01no217_n13.g1 PHD_FILE: MSMg01no217_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTATATGCAGGGAATTAAATAACAATCTCTAATAATTGAGCAGATTA
ACTCAATATCTACAGTCACAGAACAGTGATCAGTGTCAACTTCAATAAAA
CAGACTTGAGCACTCCCTTTTTCATACCTAATTAACAAAGCACATGCTTT
ATAATAAATATATTTTGAAAATGAATACTATTTATATCATTTATATACTT
GAGATTATAAAATGATTGCATAATTTCCCTCTTTCATTCTCTCCAGGTAA
ATGCTTATGCACTACCTTTATCGTTTTAATTTCATGGAGTCTTCTTTCAT
TAATTGTTTAGGTAGATTTCCCNTTGCTAGTCACGCATACACACACATGA
AAACATCCACTCACAGGCACAACCAAAAAAAAACACAAACACACACACAT
ACATACCTGTATCCTCACACACAAATAAAAAAAATAGAAGCATGCCTTTG
AGTGCACACATACACACATACACACACATACACACATACACACACACACA
CAATTGTAGGTAACTAATGTATGATGTGAAATAGTTCACGAATGTTTAAT
ATTCTTCCACAGGAAAGATTATAATTTTCTCCATGAAAGATTTTATATAA
AACCACTCTACATCTGTGCTACCATTTATAGAATGTAAAAAACACAAATA
GGTTTATCTGTATGCCCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGTATCAAACATAAAACTAGAATTCCT
TATAACCCCATGAGACAAGAAAGCTTAAATGTGCTCATCGCACCTTAAAG
AATTGGCTTTTTAAGACAAAACAGGGGCAGTTATATCCCCCAAGGTCACC
AAAGGCATATCTTGCCTTTGCTTTATTTGTTCTAATTTTTTTTGCAAACA
GATATTAAAGGTCAGTCTGCAGCGGATCACCACTGGCATCCAGTTACTTC
TAATTCTTATGCATTGGTAAAATGGAAGGACACACTAACTAACGAATGGA
AAGGTCCCGATCTGTTTCTAATCCGCCCAACGCGCTCAGTCTGTGTTTTT
TTTTTCCCGAGAGGAAGATGCAGCGAGATGAATGCCCAAGAGATTAATTC
ATCAGCTGAACACAGATCCTGAATCTTCTTGTAAGTAACACTCTGAGGGC
TAAAATTCCTCTTTTGCCTAGAAATCAGTTGGGAACACAGGCTCCCAAAA
AAAGCTGTTTTCTTGCAACTCTCAGAGCCAGCTCCCCCAGTAGGAGGCAG
GAGACTGAGTTTGAGCTTTGCTAATTTACAACTGAATAAAGTACCCGGAC
TTCCCCAAAAGAAGCTTTGCATTGTTACATTCTCATTGTCTGGATCTCAA
TTTTCAAGCAGGTCAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_n13.b1 MSMg01no217_n13.b1 CHROMAT_FILE:
MSMg01no217_n13.b1 PHD_FILE: MSMg01no217_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:38 2005
         (314 letters)



>mm_chr17_18821971_18822684
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtatatgcagggaattaaataacaatctctaataattgagcagattaactcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaattctgtatatgcagggaattaaataacaatctctaataattgagcagattaactcaa 296

                                                                       
Query: 65  tatctacagtcacagaacagtgatcagtgtcaacttcaataaaacagacttgagcactcc 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tatctacattcacagaacagtgatcagtgtcaacttcaataaaacagacttgagcactcc 236

                                                                       
Query: 125 ctttttcatacctaattaacaaagcacatgctttataataaatatattttgaaaatgaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctttttcatacctaattaacaaagcacatgctttataataaatatattttgaaaatgaat 176

                                                                       
Query: 185 actatttatatcatttatatacttgagattataaaatgattgcataatttccctctttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 actatttatatcatttatatacttgagattataaaatgattgcataatttccctctttca 116

                                                                       
Query: 245 ttctctccaggtaaatgcttatgcactacctttatcgttttaatttcatggagtcttctt 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 115 ttctctccaggtaaatgcttatgcactacctttatcattttaatttcatggagtcttctt 56

                     
Query: 305 tcattaattg 314
           ||||||||||
Sbjct: 55  tcattaattg 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)