BAC Information

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BAC

Clone NameMSMg01-218J17
Chromosome17 (Build37)
Map Location 28,841,921 - 28,842,224
singlet/doubletsinglet
Overlap geneMapk14
Upstream genePacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8
Downstream geneLOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218J17.T7 (MSMg01no218_j17.b1)MSMg01-218J17.TJ (MSMg01no218_j17.g1)
ACCAG397716AG397717
length715702
length of high quality
(start - end)
309 (48 - 356)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no218_j17.b1 PHD_FILE: MSMg01no218_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:40 2005CHROMAT_FILE: MSMg01no218_j17.g1 PHD_FILE: MSMg01no218_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGTAATTTGGTACTGAGTGCTTGCCATCTTCTCAGTCTTAA
AGGTGTATAGAACAAAGTTGGAGAGCAAATTAGAGAACATCTGTAGTCTG
AATAAAGAATTAAGATGTCCTGTTGAGGCAGAGCTTAGTTCCTTCCCCTC
TACTGAGGACTGTACTTGGTGGCTCAGTTTTCTACTGTGTAGAATGTGGC
AGGAATGAGTGGCTGCAGAAGGAATGCTGTAAATGAGATTGTACCTCCTG
TGGTGTTTTTTTCCCTGTTTTTTCTGCTGAAGGAGTAGGATATCCAACAT
CTTGCTCTTTAGGCTGCCTCCCNGGACCGAGCCCCAGGATAGTTATGAAT
TCCTTCCAATAGATGCCTCCACCACAAAAAAAAATCACTGTTCTGGAGGG
TGGACACCCCTATTCTATAGCATAGTTTCTCAGCTCTGATACCCTTTGGC
TTTTGGGGTCCAATAGTTGTTCATAATTCTTGGCTGTTGTTTCTTTTGTA
GTTTGTTTACCAAGTTCCTTCTTTCGGACACTTTCTACTTCGCTTCCCTT
GAATATTCCTTTCTCTTATACTCGCCTTGGCCCCGTTCCCCCTTGTACTT
GGTATTTTCTCTTTCCTAAACATCTTCCCCCCTCCCATTTTCTTCTTTAA
TCATCCTTTTTTTTC
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTAATGTGCTTTAAATCAGGCCT
GCAAGCTTACTTGGATGTCTCTCTCTATTCTGGTAATGGGAGACCCCAGC
ATGCTGGACTTCTGCAGAATAAAACACTCTGTGCTTACATACTGCTCGAG
TCCCAGGGTGTCATTCTTCAGCGAATCATGGACCTTTACAGACCTACTGA
GCACATGGCCCACAGCAAGGTGTGACCTTTTATATATATATATGAGACAG
GGTTTCCTCTGTGTAGCCCTGTTTATTCTGGAACTCACTTTGTAGACCAG
GCTGGCCTTTTTTTTTTACCCCTGCCTGNCCCTGCCTCCNGAGTGCTGGG
ATTAAAGGCTTGCACCACCCCCACCCGAATGTACTTACATTTTTTAAAAC
TTATCTTATGTATGGGTATTTTGCCTGCAAGCAAATGCATATCCCCCGGA
ACTAGAGTTAGACAGTTGTGAGCTGCTATGTAAATGCTGGGAATTGAACC
CTAGTCCTCTAGAGTAAACAGTGTTCCCAACCACTGACATCTCTCCTACC
CCCTCCAATTTTTACAATATGAGCAGATAAAGGTCACCGGATATTTATGT
TCAAAGGCCATTTAGGAAAAGTCAATACCAGATGAATGGAAAGCCTTTTT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_j17.b1 MSMg01no218_j17.b1 CHROMAT_FILE:
MSMg01no218_j17.b1 PHD_FILE: MSMg01no218_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:40 2005
         (309 letters)



>mm_chr17_28841717_28842424
          Length = 708

 Score =  532 bits (275), Expect = e-155
 Identities = 297/311 (95%), Gaps = 13/311 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagtaatttggtactgagtgcttgccatcttctcagtcttaaaggtgtataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtaatttggtactgagtgcttgccatcttctcagtcttaaaggtgtataga 264

                                                                       
Query: 65  acaaagttggagagcaaattagagaacatctgtagtctgaataaagaattaagatgtcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaagttggagagcaaattagagaacatctgtagtctgaataaagaattaagatgtcct 324

                                                                       
Query: 125 gttgaggcagagcttagttccttcccctctactgaggactgtacttggtggctcagtttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgaggcagagcttagttccttcccctctactgaggactgtacttggtggctcagtttt 384

                                                                       
Query: 185 ctactgtgtagaatgtggcaggaatgagtggctgcagaaggaatgctgtaaatgagattg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctactgtgtagaatgtggcaggaatgagtggctgcagaaggaatgctgtaaatgagattg 444

                                                                       
Query: 245 tacctcctgtggtgtttttttccctgtttttt------ctgctgaaggagtaggatatcc 298
           |||||||||||||| ||||| |||||            ||||||||||||||||||||||
Sbjct: 445 tacctcctgtggtgcttttt-ccctg------ggaacactgctgaaggagtaggatatcc 497

                      
Query: 299 aacatcttgct 309
           |||||||||||
Sbjct: 498 aacatcttgct 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 708
Length adjustment: 9
Effective length of query: 300
Effective length of database: 699
Effective search space:   209700
Effective search space used:   209700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)