BAC Information

Click to search

BAC

Clone NameMSMg01-231B19
Chromosome17 (Build37)
Map Location 31,490,169 - 31,613,041
singlet/doubletdoublet
Overlap genePde9a
Upstream geneBtbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
Downstream geneWdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231B19.T7 (MSMg01no231_b19.b1)MSMg01-231B19.TJ (MSMg01no231_b19.g1)
ACCAG398032AG398033
length735734
length of high quality
(start - end)
320 (45 - 364)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no231_b19.b1 PHD_FILE: MSMg01no231_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:19 2005CHROMAT_FILE: MSMg01no231_b19.g1 PHD_FILE: MSMg01no231_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,612,727 - 31,613,041)(31,490,169 - 31,490,462)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGTTTTTATATCAGTGAACAAAATGGTTCTTAGAAAACATGGTCT
GTAGCAGGTCATCAGGGGTCGTCTGGGCGTGACCATCCTTGTGTGGAAGA
TCCTGGGAAGCCTCGCTTGGCTCTGTCCACTCACAGGCCACAATTCATCT
GCTCTAACTGGTACAGTCTGCTGGAAAAAGAGGAAAATGGCATGTTTTTC
TCTGCTGGGCCTGGAGGGAGATGGCACAGCCACAGGACTGAGTGGGGATT
TGAGATGGTAATACCAAACATGCGAGAAGAAAGCAGAAAGACCTGGGCTG
GGGAGTGCTAGGATTTTGCACTGCTCTCGCACAGGACTCAAGTTCTAGCC
CCAGCAAGTACCTGTAACTCCAGTCCCAGGGTATACAATGCCCTCTCCTG
TTCTCTGTGGGTACCTGCAGTCATGTGCACATACCTGCACGTGTGTGTGT
GTACATGTATGTATGTACGTGTGTATGTATGTATGTGTGTGTTAATTTAA
AAATAAAATAGAGGTGGAAGGATGGCTCAGTGGTTAAGAGCACTGACTGC
TCTTCCAGAGGTCCCGAGTTCAATTCCCAGCAACCACACGGCGGCTCACA
ACCATCTGTAATGGGATCTGAATGCCCTTCTGGTGTGTCCGAAGACAACT
ACAGTGTACTCACATAAAATAAATAAATAGGGCTG
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTCATGAGTGGAGAAGACCTTGC
TATGACTTTCAAGTGTGCAGTTTTCAATATATATATGATATATATACATA
TATATTCATACATATGTATCATATATATATTCTTCTTTTCATCCAGCCGC
TGAGATCTTTGGAATCTGGAAATAGCAGATGAGACCCACACTGCATTCAC
ATGGAGATGTGCTACCCTGTGGCTCCCACTCAAGTCTGCAAGCAGTCCTT
GAATGGCGGGATTGCAGGCAAACACATAGCAGCCAGGGAATCCAGGCCAG
AAAGGAGGAGCCATTGATTTTTATCCCTGCCCCCCCAGCCATGAGCCAAA
GGAACTTGGTGGGCTTTCATCATGTGAGCCTCAGGTGCCCACAGGAGGGA
CCAGAGTCAGCCCTGCAGGTACCTGCCTGTAAAATCTAGTCAGGATAGGG
ATGGGGAGGTAGCTCTGATAGTAGGGTGCTTGTCTAGCATTCATGAGGTC
CTGGGTTTGGATCTGGACACCCTCAAAAATGTAAGCCTGTGTGTATATGT
GTATGTGGGCATGTGTGAAGGGATTCCAGGGGTCTGAGCAGGTAAGAGAC
TATCTTTTCTGACTGTATACATCTCTCTGCAGGACTTCTGCCCTCCAGCC
CTAGGTGATAATCTAACAATGGCCAATTGTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_b19.b1 MSMg01no231_b19.b1 CHROMAT_FILE:
MSMg01no231_b19.b1 PHD_FILE: MSMg01no231_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:19 2005
         (320 letters)



>mm_chr17_31612523_31613242
          Length = 720

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtttttatatcagtgaacaaaatggttcttagaaaacatggtctgtagcagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcctgtttttatatcagtgaacaaaatggttcttagaaaacatggtctgtagcagg 460

                                                                       
Query: 65  tcatcaggggtcgtctgggcgtgaccatccttgtgtggaagatcctgggaagcctcgctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcatcaggggtcgtctgggcgtgaccatccttgtgtggaagatcctgggaagcctcgctt 400

                                                                       
Query: 125 ggctctgtccactcacaggccacaattcatctgctctaactggtacagtctgctggaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggctctgtccactcacaggccacaattcatctgctctaactggtacagtctgctggaaaa 340

                                                                       
Query: 185 agaggaaaatggcatgtttttctctgctgggcctggagggagatggcacagccacaggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agaggaaaatggcatgtttttctctgctgggcctggagggagatggcacagccacaggac 280

                                                                       
Query: 245 tgagtggggatttgagatggtaataccaaacatgcgagaagaaagcagaaagacctgggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgagtggggatttgagatggtaataccaaacatgcgagaagaaagcagaaagacctgggc 220

                          
Query: 305 tggggagtgctagga 319
           |||||||||||||||
Sbjct: 219 tggggagtgctagga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no231_b19.g1 MSMg01no231_b19.g1 CHROMAT_FILE:
MSMg01no231_b19.g1 PHD_FILE: MSMg01no231_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:19 2005
         (294 letters)



>mm_chr17_31489969_31490662
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcatgagtggagaagaccttgctatgactttcaagtgtgcagttttcaatatatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcatgagtggagaagaccttgctatgactttcaagtgtgcagttttcaatatatata 260

                                                                       
Query: 61  tgatatatatacatatatattcatacatatgtatcatatatatattcttcttttcatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatatatacatatatattcatacatatgtatcatatatatattcttcttttcatcca 320

                                                                       
Query: 121 gccgctgagatctttggaatctggaaatagcagatgagacccacactgcattcacatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccgctgagatctttggaatctggaaatagcagatgagacccacactgcattcacatgga 380

                                                                       
Query: 181 gatgtgctaccctgtggctcccactcaagtctgcaagcagtccttgaatggcgggattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtgctaccctgtggctcccactcaagtctgcaagcagtccttgaatggcgggattgc 440

                                                                 
Query: 241 aggcaaacacatagcagccagggaatccaggccagaaaggaggagccattgatt 294
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcaaacacagagcagccagggaatccaggccagaaaggaggagccattgatt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)