Query= MSMg01no232_j10.b1 MSMg01no232_j10.b1 CHROMAT_FILE:
MSMg01no232_j10.b1 PHD_FILE: MSMg01no232_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:07 2005
(280 letters)
>mm_chr17_74002363_74003042
Length = 680
Score = 505 bits (261), Expect = e-147
Identities = 273/277 (98%), Gaps = 2/277 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttctgtctccacttcccatcttgtcatagaaatgctgggtgtcagacatgggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctgtctccacttcccatcttgtcatagaaatgctgggtgtcagacatgggc 263
Query: 64 tactgtgttgggcttcatggattcaaactcaggttgtcacatctgcatgcagcccatgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactgtgttgggcttcatggattcaaactcaggttgtcacatctgcatgcagcccatgaa 323
Query: 124 agagattttttttaaaattcttttattaggtattttcctcatttacatttccaatgctat 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agagattttttt-aaaattcttttattaggtattttcctcatttacatttccaatgctat 382
Query: 184 cccaaaagtcccccataccctcccccccctgaactcccctacccacccactcccacttct 243
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 cccaaaagttccccataccctccccccccc-aactcccctacccacccactcccacttct 441
Query: 244 tggccctggcgttcccctgtactggggcatataaagt 280
|||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggccctggcgttcccctgtactggggcatataaagt 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no232_j10.g1 MSMg01no232_j10.g1 CHROMAT_FILE:
MSMg01no232_j10.g1 PHD_FILE: MSMg01no232_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:07 2005
(283 letters)
>mm_chr17_74138263_74138945
Length = 683
Score = 493 bits (255), Expect = e-144
Identities = 276/283 (97%)
Strand = Plus / Minus
Query: 1 attagctttcagatgacttaggaaaacccgcctctgacgtgacaaacagctcatctgttt 60
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 483 attatctttcagatgacttaggaaaaccagcctctgacgtgacaaacagctcacctgttt 424
Query: 61 ttttgcttgtttgtttgttttgtttccaaactttgcaaagaatcccttaaagaatatttt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 423 ttttgcttgtttgtttgttttgtttccaaactttgcaaagagtcccttaaagaatatttt 364
Query: 121 ccctatgacattcttcagcgcctgtgaatgtgagggaaataataaagtggatattggaac 180
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 363 cccgatgacattcttcagcgcctgtgaatgtgagggaattaataaagtggatattggaac 304
Query: 181 ttactttggaacctaagagctcactttaatttatgagctagcccacaaagcctcttttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttactttggaacctaagagctcactttaatttatgagctagcccacaaagcctcttttta 244
Query: 241 ttatgtggttgttttgggataaatttctagttcttgaaggtat 283
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 243 ttatgtgggtgttttgggataaatttctagttcttgaaggtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
