BAC Information

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BAC

Clone NameMSMg01-232P22
Chromosome17 (Build37)
Map Location 56,871,881 - 56,872,221
singlet/doubletsinglet
Overlap genenone
Upstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11
Downstream geneFut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232P22.T7 (MSMg01no232_p22.b1)MSMg01-232P22.TJ (MSMg01no232_p22.g1)
ACCAG399332AG399333
length728730
length of high quality
(start - end)		320 (46 - 365)341 (386 - 726)
definitionCHROMAT_FILE: MSMg01no232_p22.b1 PHD_FILE: MSMg01no232_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:37 2005CHROMAT_FILE: MSMg01no232_p22.g1 PHD_FILE: MSMg01no232_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAAAAATCCGCCTGCCT
CTGCCTCCCAAGTGCTAGGATTAAACGCGTGCGCCACCACCACCTGGCTC
AAATGTAATTTTTAAAAGGTTTGGGGCTGGAGTGGCAGCTCAGCAGCTAA
GAACTCTTCCTACTCTCCCCGCGTGTGTTGTGTGAGTTTACCTCTTAGTC
ACGAGGTTTAGGGACCCACAGCCACCGACTACTCCAGCTCCCAGGGACCT
AATACCTTCTTTTGGCTTCTGTGGGCAGCTATATGCCCATGGCCACGTGC
AGACTGCACACATCTATATATCTACCACCCCCCAGGTAAAGAAAAGAGGG
TCCTGGGCTCTCTGGCCAGCACCCTGGCCAGCGAGAATAGCTTCAGGGAA
GAAATATGAGGAGATGCAAAGGGAGTAAGCTGGGGTAATGCGGACCTGCA
AACACAAAAACCCAATGAGTGCCCAGAACTCAAACCCTGAGGGTTCCTAC
AGTCCTGGGTCAGTGGGTAAACAAAGGCTCTTCTCGAAAGCCCACTGGCC
TGGCTGAGGTGGCGAGTGCCTGGCTCAGAGGGAGACCTGTTTTAACACAG
AGACATGGCAAGCAACAGAGATACTGCCGGGTGCCCTGCACATCCACACA
CCCAGATGGATGGCATGTGAGCTGTGAC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCGAAAATCTCTGGAAGGGGTCAGAAGAAAGCATGG
AAGAGAAGTTCTGAATGTATTTCTCCACCCCAACCCTCCCTCATCTGCGA
TTGAGATTCCAAGTTGGGGCTCAGCTAGGACTTGAGCTCAGCGTAGGTTA
GGAACTCAGCCCAAGGCCGGGTGCTGGAGGCTAGATCCAGCATGTTTCAA
AGACCAGAGAAGGTCCCACGTAGCTCAAGTCTCTCTCTTCACTTCATCCT
AGTGTCACAAAGCATATGGTTTCAGTTTTATAATCTTCAAACATGCTCCA
AGGAAGCAATTGACTTTTTTTGTGAACCCCCCCCCTTATCTTTATCAGTT
TCTTTCTTATGCGCTTTCTTCCCCCCAACAGATATTGAACCTTTTGCCCA
TCACTGGCATCACATCTTTAGCATCACAGTTGGCACCCTGTGTCTTAAAC
ACCTACTCCAAGTGCTTACATGAGCTCACACTCGCAGGATCTTTCTTTCT
GTCCTGCACAGCCATGGCCGTAATGAGAAAATTTATTCCATTGCCACATG
GTCTGGTTGTCTGTTGGCCAACCTTTTCTATTTTCTAACTACTTGAGGTT
TTGGAATCTACATAGATGAGTTCCTTGTTCCTGAACTCACGTCATAATGT
TCATGTGTATTCATTAACTTCTCCAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_p22.g1 MSMg01no232_p22.g1 CHROMAT_FILE:
MSMg01no232_p22.g1 PHD_FILE: MSMg01no232_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:37 2005
         (341 letters)



>mm_chr17_56871681_56872421
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 336/341 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatctttatcagtttctttcttatgcgctttcttccccccaacagatattgaacctttt 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 201 ttatctttatcagtttctttcttatgcgctttcttttccccaacagatattgaacctttt 260

                                                                       
Query: 61  gcccatcactggcatcacatctttagcatcacagttggcaccctgtgtcttaaacaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccatcactggcatcacatctttagcatcacagttggcaccctgtgtcttaaacaccta 320

                                                                       
Query: 121 ctccaagtgcttacatgagctcacactcgcaggatctttctttctgtcctgcacagccat 180
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ctccaagtgcttacctgagctcacactggcaggatctttctttctgtcctgcacagccat 380

                                                                       
Query: 181 ggccgtaatgagaaaatttattccattgccacatggtctggttgtctgttggccaacctt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccgtaatgagaaagtttattccattgccacatggtctggttgtctgttggccaacctt 440

                                                                       
Query: 241 ttctattttctaactacttgaggttttggaatctacatagatgagttccttgttcctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctattttctaactacttgaggttttggaatctacatagatgagttccttgttcctgaa 500

                                                    
Query: 301 ctcacgtcataatgttcatgtgtattcattaacttctccaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcacgtcataatgttcatgtgtattcattaacttctccaa 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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