BAC Information

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BAC

Clone NameMSMg01-235A14
Chromosome17 (Build37)
Map Location 87,506,296 - 87,506,577
singlet/doubletsinglet
Overlap genenone
Upstream geneSrbd1, LOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144
Downstream geneSocs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235A14.T7 (MSMg01no235_a14.b1)MSMg01-235A14.TJ (MSMg01no235_a14.g1)
ACCAG400739AG400740
length732723
length of high quality
(start - end)
55 (44 - 98)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no235_a14.b1 PHD_FILE: MSMg01no235_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:15 2005CHROMAT_FILE: MSMg01no235_a14.g1 PHD_FILE: MSMg01no235_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAGA
GGCTGGAAAGGGGGCAGGAAAACTCATTACTCGGATTTCTGCATCCAGTT
CTACAGTGTCTGTGCCCTGGGGAGGGCAGAGGAAAGGGAAGTACACTGAA
GGCAGCAGCCGCCAAGTGGAGACTAACCAGGCCAGGGGCTGGCCATCTAT
CCACCTGGCACATGAAAGGAAGTTATTTCTCCTGAGGAGATATTTGGTGA
GGTGGTAGTGTTTTACATTTAAAAAACAATCTTTGATAAAATAAAAAGTT
TAAATAACCATTAACCAGGTGTTCAGAGCTCTAGAGACACTGTGTGCTGG
GCACAGTGTTTTTTTTGAGCACCCCCCCCACCCCCCTTCCCATCCAGCTC
CTTAGTGGTGGGTCACCCCCCAACACAGAAAAGATGCTGAGTGTCCCCCA
AAAAGACCCAGAGGAAGTGGGCAGGGTGCTCAGCCCACGTGCACCAGAGA
GCTTGGGGATAGGGGCAAAGGCTGGTGCCAGACCAGAGACAGTCAAGCCA
GACGTTATTAGGAGAGCAGCCCTTTTAGAAACCCTCGTTTCATAATTACA
AGTGGGATAGCCTTCACTAGTGAGGGCAAAACACATCTCCTGAGAGCATT
GTTTCTGAACCCGAATCCGGCCCTGACACCCCACTCGGGTTCTGAAAACA
ATCTCTGGTTGTCACTGTCGTGCTCCGCTTCC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGACTCGGATGGCTCCATGCTGAAG
GGAGCTAGGGAGACTCATTCACATTTTTTTCCTACCCGGCACTCGCAACC
TCCATTCAGCATTTTCCCCTTGGTCTCCCTAACGGAGCCCAAAGGAACAA
AGCTACTCCCCACCCGCACCTCGGGTTGACCTTCCACCCGAGCGCCCACC
CCTAGCCCGTTCCACGGCCACGTGACCCTCTCCAGCCTCCTAGCCTCCCG
GGCCTCTCCCCCTCCCCTCCAGTCCGAGCCCGCTTGGCCCCGCCCACCCC
GCCCATGTGTCAGCCTCCCTCCCAACTGACTGGCTCCTCCCTCTTCGGCC
GAACCCGGCCGCTTGTCTCAGCTGCCCGACTCCAAAATGGCAGCCGCGCA
CAGCACGCACCAGCGCGGCCGGACCTCCTTAACTCGCCGGCCTCCCCTCT
TTAGCTCCCAGCCTCCCTCCTCCGGCCTTCACCTACCCGCCTCTGGATTG
GCCGCCGGGAGTCCCGCCCACCTGGAGCCCCGCCTGCCATTGGTCACGGT
AGGCTGCCCTTCAGAGAGGCGTGGCCCAGCCCGCCCCCCACCCCGGGAGG
TATTTTCCATTCCGGTGGGGGGCTGGGGGGGGGCGGGGGGNAAGGCNNNN
NNTTTTTNTGCTGGGGGTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_a14.g1 MSMg01no235_a14.g1 CHROMAT_FILE:
MSMg01no235_a14.g1 PHD_FILE: MSMg01no235_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:15 2005
         (285 letters)



>mm_chr17_87506096_87506780
          Length = 685

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgactcggatggctccatgctgaagggagctagggagactcattcacatttttttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgactcggatggctccatgctgaagggagctagggagactcattcacatttttttcct 260

                                                                       
Query: 61  acccggcactcgcaacctccattcagcattttccccttggtctccctaacggagcccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccggcactcgcaacctccattcagcattttccccttggtctccctaacggagcccaaa 320

                                                                       
Query: 121 ggaacaaagctactccccacccgcacctcgggttgaccttccacccgagcgcccacccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacaaagctactccccacccgcacctcgggttgaccttccacccgagcgcccacccct 380

                                                                       
Query: 181 agcccgttccacggccacgtgaccctctccagcctcctagcctcccgggcctctccccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcccgttccacggccacgtgaccctctccagcctcctagcctcccgggcctctccccct 440

                                                     
Query: 241 cccctccagtccgagcccgcttggccccgcccaccccgccca 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctccagtccgagcccgcttggccccgcccaccccgccca 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)