MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-235F20
Chromosome	17 (Build37)
Map Location	31,489,848 - 31,490,162
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
Downstream gene	Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l
Link	Open Mouse BAC browser

Click to get alignment info.

name	Btbd9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224671 MGI:1916625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG623169 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623169 MGI:3645740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 947 ESTs, 9 Proteins

name	Glo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109801 MGI:95742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666942 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666942
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	1700097N02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67522 MGI:1914772
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs

name	Dnahc8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13417 MGI:107714
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Glp1r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14652 MGI:99571
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Umodl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52020 MGI:1929785
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abcg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11307 MGI:107704
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tff3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21786 MGI:104638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tff2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21785 MGI:1306805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042904 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042904
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tff1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21784 MGI:88135
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmprss3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140765 MGI:2155445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ubash3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328795 MGI:1926074
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042906 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042906
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tsga2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22092 MGI:1194909
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667056 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667056 MGI:3642987
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs

name	Slc37a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224674 MGI:2446181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pde9a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18585 MGI:1277179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57773 MGI:1889002
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1500032D16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78330 MGI:1925580
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Pknox1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18771 MGI:1201409
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cbs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12411 MGI:88285
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC623242 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623242
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1398 ESTs, 8 Proteins pseudo : _no_value

name	U2af1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108121 MGI:98884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cryaa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12954 MGI:88515
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snf1lk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17691 MGI:104754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hsf2bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74377 MGI:1921627
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 32 ESTs, 1 Protein

name	Rrp1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72462 MGI:1919712
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC435518 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435518
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Notch3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18131 MGI:99460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdxk-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140553 MGI:1933201
definition	note : pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene pseudo : _no_value

name	Abhd9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71932 MGI:1919182
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Brd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57261 MGI:1888520
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100043434 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043434
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins pseudo : _no_value

name	LOC100043433 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Akap8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56399 MGI:1928488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akap8l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54194 MGI:1860606
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Btbd9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27819603 GeneID:224671 MGI:1916625
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BTB (POZ) domain containing 9 transcript_id : NM_172618.1

name	EG623169 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94401858 GeneID:623169 MGI:3645740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 946 ESTs, 9 Proteins product : predicted gene, EG623169 transcript_id : XM_892956.2

name	Glo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981281 GeneID:109801 MGI:95742
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glyoxalase 1 transcript_id : NM_025374.2

name	1700097N02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268650 GeneID:67522 MGI:1914772
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs product : RIKEN cDNA 1700097N02 gene transcript_id : XM_001479022.1

name	Dnahc8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384921 GeneID:13417 MGI:107714
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynein, axonemal, heavy chain 8 transcript_id : NM_013811.2

name	Glp1r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111378378 GeneID:14652 MGI:99571
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucagon-like peptide 1 receptor transcript_id : NM_021332.2

name	Umodl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115270978 GeneID:52020 MGI:1929785
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uromodulin-like 1 transcript_id : NM_177465.4

name	Abcg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6752939 GeneID:11307 MGI:107704
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family G (WHITE), member 1 transcript_id : NM_009593.1

name	Tff3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755772 GeneID:21786 MGI:104638
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trefoil factor 3, intestinal transcript_id : NM_011575.1

name	Tff2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385262 GeneID:21785 MGI:1306805
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trefoil factor 2 (spasmolytic protein 1) transcript_id : NM_009363.3

name	LOC100042904 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268652 GeneID:100042904
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042904 transcript_id : XM_001479034.1

name	Tff1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678306 GeneID:21784 MGI:88135
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trefoil factor 1 transcript_id : NM_009362.1

name	Tmprss3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18141558 GeneID:140765 MGI:2155445
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protease, serine 3 transcript_id : NM_080727.1

name	Ubash3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362428 GeneID:328795 MGI:1926074
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin associated and SH3 domain containing, A transcript_id : NM_177823.3

name	LOC100042906 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268654 GeneID:100042906
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042906 transcript_id : XM_001479042.1

name	Tsga2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130375 GeneID:22092 MGI:1194909
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis specific gene A2 transcript_id : NM_025290.3

name	EG667056 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94401864 GeneID:667056 MGI:3642987
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs product : predicted gene, EG667056 transcript_id : XM_987982.1

name	Slc37a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130176 GeneID:224674 MGI:2446181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 37 (glycerol-3-phosphate transporter), member 1 transcript_id : NM_153062.2

name	Pde9a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802966 GeneID:18585 MGI:1277179
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphodiesterase 9A transcript_id : NM_008804.3

name	Wdr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946627 GeneID:57773 MGI:1889002
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 4 transcript_id : NM_021322.1

name	1500032D16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140972308 GeneID:78330 MGI:1925580
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1500032D16 gene transcript_id : NM_030087.2

name	1500032D16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140969945 GeneID:78330 MGI:1925580
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1500032D16 gene transcript_id : NM_001083891.1

name	Pknox1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34368579 GeneID:18771 MGI:1201409
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Pbx/knotted 1 homeobox transcript_id : NM_016670.2

name	Cbs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130062 GeneID:12411 MGI:88285
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cystathionine beta-synthase transcript_id : NM_144855.2

name	Cbs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130577 GeneID:12411 MGI:88285
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cystathionine beta-synthase transcript_id : NM_178224.2

name	U2af1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353372 GeneID:108121 MGI:98884
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 transcript_id : NM_024187.3

name	Cryaa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113931666 GeneID:12954 MGI:88515
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : crystallin, alpha A transcript_id : NM_013501.2

name	Snf1lk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110815829 GeneID:17691 MGI:104754
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SNF1-like kinase transcript_id : NM_010831.2

name	Hsf2bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268656 GeneID:74377 MGI:1921627
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 32 ESTs, 1 Protein product : heat shock transcription factor 2 binding protein transcript_id : XM_484622.4

name	Rrp1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28076996 GeneID:72462 MGI:1919712
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal RNA processing 1 homolog B (S. cerevisiae) transcript_id : NM_028244.1

name	Notch3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130663 GeneID:18131 MGI:99460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Notch gene homolog 3 (Drosophila) transcript_id : NM_008716.2

name	Abhd9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369966 GeneID:71932 MGI:1919182
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : abhydrolase domain containing 9 transcript_id : NM_001033163.2

name	Brd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560787 GeneID:57261 MGI:1888520
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bromodomain containing 4 transcript_id : NM_020508.2

name	Brd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37674286 GeneID:57261 MGI:1888520
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bromodomain containing 4 transcript_id : NM_198094.1

name	LOC100043433 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268731 GeneID:100043433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043433 transcript_id : XM_001480478.1

name	Akap8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801979 GeneID:56399 MGI:1928488
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : A kinase (PRKA) anchor protein 8 transcript_id : NM_019774.3

name	Akap8l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70780372 GeneID:54194 MGI:1860606
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : A kinase (PRKA) anchor protein 8-like transcript_id : NM_017476.2

name	Btbd9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27819604 CCDS:CCDS28599.1 GeneID:224671 MGI:1916625
definition	GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 product : BTB (POZ) domain containing 9 protein_id : NP_766206.1

name	EG623169 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82992678 GeneID:623169 MGI:3645740
definition	codon_start : 1 product : similar to ribosomal protein S17 protein_id : XP_898049.1

name	Glo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981282 CCDS:CCDS28600.1 GeneID:109801 MGI:95742
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0004462 - lactoylglutathione lyase activity [Evidence ISS] [Evidence IDA] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence ISS] codon_start : 1 exception : mismatches in translation note : glyoxalase 1 complex; glyoxalase 1 regulatory; glyoxalase 1 structural product : glyoxalase 1 protein_id : NP_079650.2

name	1700097N02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268651 GeneID:67522 MGI:1914772
definition	codon_start : 1 product : hypothetical protein LOC67522 protein_id : XP_001479072.1

name	Dnahc8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328061 GeneID:13417 MGI:107714
definition	GO_component : GO:0005858 - axonemal dynein complex [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0009434 - flagellum (sensu Eukaryota) [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA] codon_start : 1 exception : mismatches in translation function : ATPase note : dynein, axon, heavy chain 8; axonemal dynein heavy chain 8 Dnahc8; region surrounding P-loop 1 product : dynein, axonemal, heavy chain 8 protein_id : NP_038839.1

name	Glp1r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111378379 GeneID:14652 MGI:99571
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004967 - glucagon receptor activity [Evidence IEA]; GO:0008528 - peptide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007611 - learning and/or memory [Evidence IMP]; GO:0007218 - neuropeptide signaling pathway [Evidence TAS]; GO:0008016 - regulation of heart contraction [Evidence IMP]; GO:0006950 - response to stress [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : glucagon-like peptide 1 receptor protein_id : NP_067307.2

name	Umodl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83776549 GeneID:52020 MGI:1929785
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : olfactorin product : uromodulin-like 1 protein_id : NP_803416.2

name	Abcg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6752940 CCDS:CCDS28602.1 GeneID:11307 MGI:107704
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0015646 - permease activity [Evidence IEA] GO_process : GO:0030301 - cholesterol transport [Evidence IDA]; GO:0006869 - lipid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ATP-binding cassette 8 product : ATP-binding cassette, subfamily G, member 1 protein_id : NP_033723.1

name	Tff3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755773 GeneID:21786 MGI:104638
definition	GO_component : GO:0030141 - secretory granule [Evidence IDA] codon_start : 1 product : trefoil factor 3, intestinal protein_id : NP_035705.1

name	Tff2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981962 GeneID:21785 MGI:1306805
definition	codon_start : 1 product : trefoil factor 2 protein_id : NP_033389.2

name	LOC100042904 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268653 GeneID:100042904
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479084.1

name	Tff1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678307 GeneID:21784 MGI:88135
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS] GO_function : GO:0008083 - growth factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030154 - cell differentiation [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0009611 - response to wounding [Evidence TAS] codon_start : 1 product : trefoil factor 1 protein_id : NP_033388.1

name	Tmprss3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18141559 GeneID:140765 MGI:2155445
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] GO_function : GO:0008233 - peptidase activity [Evidence IEA]; GO:0017080 - sodium channel regulator activity [Evidence ISS] GO_process : GO:0006883 - sodium ion homeostasis [Evidence ISS] codon_start : 1 exception : mismatches in translation function : transmembrane serine protease note : transmembrane proteinase serine 3 product : transmembrane protease, serine 3 protein_id : NP_542765.1

name	Ubash3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244388 GeneID:328795 MGI:1926074
definition	GO_process : GO:0050860 - negative regulation of T cell receptor signaling pathway [Evidence IGI]; GO:0001817 - regulation of cytokine production [Evidence IGI] codon_start : 1 product : ubiquitin associated and SH3 domain containing, A protein_id : NP_808491.1

name	LOC100042906 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268655 GeneID:100042906
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479092.1

name	Tsga2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384638 CCDS:CCDS28604.1 GeneID:22092 MGI:1194909
definition	GO_process : GO:0007126 - meiosis [Evidence IEA] codon_start : 1 note : meichroacidin; TSGA2 epididymal isoform product : testis specific gene A2 protein_id : NP_079566.1

name	EG667056 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94401865 GeneID:667056 MGI:3642987
definition	codon_start : 1 product : hypothetical protein protein_id : XP_993076.1

name	Slc37a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346457 GeneID:224674 MGI:2446181
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : solute carrier family 37 (glycerol-3-phosphate transporter), member 1-like product : solute carrier family 37 member 1 protein_id : NP_694702.1

name	Pde9a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982131 CCDS:CCDS28605.1 GeneID:18585 MGI:1277179
definition	GO_function : GO:0047555 - 3',5'-cyclic-GMP phosphodiesterase activity [Evidence IDA]; GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : phosphodiesterase 9A protein_id : NP_032830.2

name	Wdr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946628 CCDS:CCDS28606.1 GeneID:57773 MGI:1889002
definition	GO_process : GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation note : WD40 repeat protein 4 product : WD repeat domain 4 protein_id : NP_067297.1

name	1500032D16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:140972309 GeneID:78330 MGI:1925580
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; NADH-ubiquinone oxidoreductase flavoprotein 3 product : NADH-ubiquinone oxidoreductase flavoprotein 3 isoform 1 protein_id : NP_084363.2

name	1500032D16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:140969946 GeneID:78330 MGI:1925580
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; NADH-ubiquinone oxidoreductase flavoprotein 3 product : NADH-ubiquinone oxidoreductase flavoprotein 3 isoform 2 protein_id : NP_001077360.1

name	Pknox1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34368580 CCDS:CCDS28608.1 GeneID:18771 MGI:1201409
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : Pbx/knotted 1 homeobox protein_id : NP_057879.2

name	Cbs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30089694 CCDS:CCDS28610.1 GeneID:12411 MGI:88285
definition	EC_number : 4.2.1.22 GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004122 - cystathionine beta-synthase activity [Evidence IEA] GO_process : GO:0019343 - cysteine biosynthesis via cystathione [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : cystathionine beta-synthase isoform 2 protein_id : NP_835742.1

name	Cbs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450071 CCDS:CCDS28609.1 GeneID:12411 MGI:88285
definition	EC_number : 4.2.1.22 GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004122 - cystathionine beta-synthase activity [Evidence IEA] GO_process : GO:0019343 - cysteine biosynthesis via cystathione [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : cystathionine beta-synthase isoform 1 protein_id : NP_659104.1

name	U2af1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17530980 CCDS:CCDS28611.1 GeneID:108121 MGI:98884
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] codon_start : 1 exception : mismatches in translation note : U2 small nuclear ribonucleoprotein auxiliary factor (U2AF),35 kDa product : U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 protein_id : NP_077149.1

name	Cryaa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794510 GeneID:12954 MGI:88515
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005212 - structural constituent of eye lens [Evidence TAS] GO_process : GO:0001747 - eye development (sensu Mammalia) [Evidence IGI]; GO:0000072 - M phase specific microtubule process [Evidence IMP]; GO:0007423 - sensory organ development [Evidence IEA] codon_start : 1 note : lens opacity 18; crystallin, alpha 1; alpha-A-crystallin product : crystallin, alpha A protein_id : NP_038529.1

name	Snf1lk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110815830 GeneID:17691 MGI:104754
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IDA] [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IDA] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA] [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] [Evidence IDA]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0045595 - regulation of cell differentiation [Evidence IEP]; GO:0007346 - regulation of progression through mitotic cell cycle [Evidence IDA] codon_start : 1 note : SNF1-like kinase (MGD\|MGI:104754 GB\|NM_010831, evidence: BLASTN, 98%, match=4488); putative; myocardial SNF1-like kinase; salt inducible kinase product : SNF1-like kinase protein_id : NP_034961.2

name	Hsf2bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94401867 GeneID:74377 MGI:1921627
definition	codon_start : 1 product : heat shock transcription factor 2 binding protein protein_id : XP_484622.3

name	Rrp1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076997 CCDS:CCDS28613.1 GeneID:72462 MGI:1919712
definition	GO_component : GO:0030688 - nucleolar preribosome, small subunit precursor [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA] GO_process : GO:0006364 - rRNA processing [Evidence IEA]; GO:0006801 - superoxide metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ribosomal RNA processing 1 homolog B protein_id : NP_082520.1

name	Notch3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679096 CCDS:CCDS28614.1 GeneID:18131 MGI:99460
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IC]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0030900 - forebrain development [Evidence IGI]; GO:0045596 - negative regulation of cell differentiation [Evidence IMP]; GO:0045665 - negative regulation of neuron differentiation [Evidence IMP]; GO:0048663 - neuron fate commitment [Evidence IGI]; GO:0007219 - Notch signaling pathway [Evidence IEA] [Evidence IC]; GO:0050793 - regulation of development [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : Notch gene homolog 3 protein_id : NP_032742.1

name	Abhd9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83716015 CCDS:CCDS28615.1 GeneID:71932 MGI:1919182
definition	codon_start : 1 product : abhydrolase domain containing 9 protein_id : NP_001028335.1

name	Brd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560788 GeneID:57261 MGI:1888520
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0043388 - positive regulation of DNA binding [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IPI] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; bromodomain-containing 5; fsh-like protein product : bromodomain containing 4 isoform 1 protein_id : NP_065254.2

name	Brd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37674287 GeneID:57261 MGI:1888520
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0043388 - positive regulation of DNA binding [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IPI] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; bromodomain-containing 5; fsh-like protein product : bromodomain containing 4 isoform 2 protein_id : NP_932762.1

name	LOC100043433 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268732 GeneID:100043433
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480528.1

name	Akap8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560394 GeneID:56399 MGI:1928488
definition	GO_component : GO:0000793 - condensed chromosome [Evidence IDA] [Evidence ISS]; GO:0001939 - female pronucleus [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0000790 - nuclear chromatin [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007076 - mitotic chromosome condensation [Evidence ISS] [Evidence IDA] codon_start : 1 note : A kinase anchor protein 95 product : A kinase anchor protein 8 protein_id : NP_062748.2

name	Akap8l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70780373 GeneID:54194 MGI:1860606
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : neighbor of A-kinase anchoring protein 95 product : A kinase (PRKA) anchor protein 8-like protein_id : NP_059504.2

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 11 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 10 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 9 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 8 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 7 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 6 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 5 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 4 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 3 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 2 pseudo : _no_value

name	LOC435518 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435518
definition	number : 1 pseudo : _no_value

name	LOC666942 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268723 GeneID:666942
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to 40S ribosomal protein S13 pseudo : _no_value transcript_id : XR_034644.1

name	LOC623242 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268730 GeneID:623242
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1398 ESTs, 8 Proteins product : similar to ribosomal protein S2 pseudo : _no_value transcript_id : XR_034688.1

name	LOC100043434 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268733 GeneID:100043434
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins product : similar to ribosomal protein L34 pseudo : _no_value transcript_id : XR_034714.1

clone name	MSMg01-329G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088D23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-322J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123J12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-504O10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-519K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027N01
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-235F20.T7 (MSMg01no235_f20.b1)	MSMg01-235F20.TJ (MSMg01no235_f20.g1)
ACC	AG400960	AG400961
length	722	727
length of high quality (start - end)	---	287 (77 - 363)
definition	CHROMAT_FILE: MSMg01no235_f20.b1 PHD_FILE: MSMg01no235_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:40 2005	CHROMAT_FILE: MSMg01no235_f20.g1 PHD_FILE: MSMg01no235_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:40 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCTGAGGGACCTCAGCAGAATCCTAACTCCATGACAGCACAGGAGGCT CTTCTCCCTGAGGCCAGGCTGCCCGAGATGGCCGCTAGCTGATAGCAGCT CTTACCAGCAGACCTTCCTGAAAGGCGAAGGACGTCGGCAGCCATTGCCT CTCCCTCACCCCAGGTCCCCTAAGAAGCTGATGAAAGGGGAAGAAGGGTG ACTTTGGAAATGCAGGAAGTAGGCTGGAATATAAAGGTTCCTTTTCTGCC TCGTGGAAATGGTGCCTGCATTCCCTGCATTGACCTTTGGCTCCAGCCCA CTGGAGGAGACCTGACTGAGTGAGGCTCTCTCTTCCTGAATGGGCACATT CATGGCTTCCCCGACATGAATGAGGGTTTGGCCTGAGGAGCCGCTTTGCC TGCGTGACCCATACCACCTTCACTGAGCCACCTGCAGAACGGCCTGCTAG AAACTAGGGGTCAAAGCTACTCTCAACTTATCTTCCAGACTCCTTGACTG AGACCTACTGAGACTGATGAATGCAGGTTGCCTGGTGTGCGCTCCTCTGC CCTTATCACTCACTATAGGGGAAGTTTCATGTCTAGCAGAGAAGTGAACC GCACCTACTCAGCCTANAGCCATGATTCATACCCCTACCTGGCAAAATCT TATACTACTCGGACTGTGCAGG	CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTATACTGCTCTTAAAAGCAG TAGGGTGTGAGTGTGGCAGTAGGGTGTGTGTACACGTGCCAGAGAGAGAG AGAGAGAGGGAGAGAGAGAGAGAGAGAGAGCTAGCTTTCAGTTTCTGAAG CACTTGTCAGCAGGGCTCAGTCTGAAAGTGAAAGACTGCGGGATAGCTTT TCCTCGTGGGCCATGGGAGATTTTCTTTCAGGGCTTCAGTACGTTGAGCT GGATGCATGAACTCACCCTTGAGGTTTCCTGCACTGAATACCTGGTGGCC ATGAGCTGGGAGTTTTTTTGGTCCCGCCCCCCCACTGTCCCACACCAGGA GACATGATTGCTGAAGGCTCACAGGAATCCTTCTGTAGGCAGAGAGCCAT GAGTTTCAAAGAGCTTATTTAATTTTTTTTTCCCCACTGGGCAGGGGTGG TGCATGCCTTTAATCTCAGCACTCGAGGAGGCAGAGGCAGGCAGATCTCT GAGTTTGACACTAGCCTGGTCTACAGAACAAGTTCTAGGACAGCTAGGGC TACACAGAGAAACCCTGTCTCCAACAAACTAACATCTTCCAACAGGGTAG TTGTGTATATGAACTCACAGTGGTTGTGACAGTATGCACAAAGCCAGCTC AAGCCAGACAAAATCCCATCATGCAGG
quality values	Open. Hide. 8 10 8 8 8 13 15 37 59 41 33 32 32 28 28 37 24 23 25 28 28 30 48 59 35 35 32 32 34 36 44 37 33 25 25 25 28 43 43 37 37 23 26 26 37 43 57 57 40 37 37 25 34 28 28 28 32 32 28 28 18 17 13 11 11 9 11 11 12 11 12 14 19 25 25 33 31 32 35 24 29 16 12 11 21 21 20 19 25 24 30 30 33 33 34 42 42 48 43 39 42 41 43 43 43 43 43 43 30 29 17 17 16 19 19 25 23 22 16 22 12 12 12 22 12 10 10 10 13 10 15 20 34 44 32 32 14 13 13 15 19 10 10 10 22 28 35 35 32 35 42 32 32 15 15 12 12 12 13 15 26 32 35 35 42 43 43 42 32 32 15 15 24 21 18 15 16 16 16 17 38 24 27 20 16 16 16 16 18 38 36 33 33 43 43 43 35 28 28 18 18 23 38 33 32 32 27 27 23 32 28 28 13 27 21 29 29 43 43 43 33 26 26 40 42 28 38 20 24 24 15 15 16 19 16 15 15 13 13 13 13 13 38 18 21 21 21 28 27 27 38 24 32 15 15 11 11 12 19 30 30 15 15 13 13 14 18 15 13 13 13 28 24 24 12 13 12 18 12 11 11 15 27 12 12 11 12 12 30 24 32 32 42 47 43 41 41 39 39 32 30 23 14 14 13 15 13 15 15 19 12 12 12 15 21 24 27 22 18 18 15 25 19 30 22 30 24 30 30 33 33 44 43 37 28 28 21 28 13 13 12 12 18 28 21 20 17 17 8 12 7 7 8 15 12 22 16 19 12 11 11 16 16 26 19 28 27 25 13 13 13 26 21 28 20 23 23 30 30 37 41 39 39 30 32 32 27 24 13 12 12 13 13 13 13 12 12 14 14 21 13 13 13 15 18 21 22 30 27 24 24 11 11 11 11 11 11 30 32 23 23 23 28 30 28 20 20 12 12 11 12 12 24 22 26 15 27 17 19 19 28 30 39 28 34 15 15 12 19 15 21 15 18 15 15 12 15 13 19 17 19 19 28 21 14 14 14 26 22 21 11 11 11 11 10 8 10 12 8 8 10 15 20 19 17 15 10 10 11 13 11 17 24 16 15 10 10 10 10 12 12 18 18 28 24 14 13 15 12 12 16 12 11 11 11 16 17 23 26 34 36 26 26 17 17 17 28 28 19 17 17 22 23 21 12 11 10 13 13 18 19 15 25 18 20 16 25 24 19 17 8 8 8 10 15 24 37 34 28 23 14 14 21 19 19 18 12 12 11 12 12 19 18 21 15 15 12 15 18 18 13 15 12 12 10 11 10 13 9 9 9 9 24 24 31 31 28 28 23 19 20 28 28 37 32 32 19 19 12 15 12 12 11 12 12 18 12 19 19 14 14 14 28 18 17 13 16 11 11 11 12 15 12 12 15 15 12 10 10 10 10 10 11 12 11 10 10 11 15 16 9 14 12 14 12 12 12 12 12 12 15 15 15 12 15 3 0 3 12 12 17 21 12 10 6 6 6 6 6 8 6 6 14 9 16 14 12 15 10 10 10 10 11 10 12 12 12 12 12 21 13 11 11 11 11 11 11 11 11 11 10 10 13 12 9 8 7 7 8 10 10 10	Open. Hide. 9 9 15 15 10 8 8 8 8 19 23 37 37 37 39 41 41 53 53 53 57 57 57 57 57 57 57 59 59 57 57 57 57 57 57 57 68 54 42 42 42 42 48 48 57 54 54 54 54 54 68 68 68 68 68 68 68 68 68 68 68 48 48 46 46 46 48 59 68 68 51 51 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 48 48 40 44 39 37 33 28 34 32 59 57 68 68 57 57 57 59 59 57 57 59 59 57 57 59 59 59 57 57 57 53 53 50 59 59 41 33 28 22 17 10 10 12 12 13 14 11 11 11 16 11 11 11 9 14 16 17 15 15 11 11 11 24 22 43 43 47 47 47 48 48 48 48 48 48 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 36 34 26 26 13 13 13 15 19 26 33 29 28 28 37 37 39 32 32 19 21 18 28 32 59 59 59 59 43 57 39 36 30 25 25 40 40 43 57 48 57 57 54 54 57 59 68 68 68 59 59 68 68 59 57 54 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 54 57 57 57 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 44 44 37 30 30 39 44 59 48 48 48 57 48 54 54 48 48 57 59 43 43 43 43 47 47 48 59 59 59 59 48 59 59 59 59 57 57 57 48 57 59 57 48 48 48 43 41 47 40 41 43 43 41 34 32 39 37 30 30 17 18 41 30 43 34 34 23 23 28 34 39 57 48 48 43 43 43 43 32 41 28 28 28 41 41 37 21 22 11 13 23 27 27 28 28 30 37 32 31 29 32 39 36 36 39 28 28 24 24 24 28 43 48 43 43 48 43 41 37 37 30 37 37 28 20 18 15 15 18 24 24 25 25 12 13 11 16 16 21 21 16 21 21 17 17 24 30 26 30 15 19 11 11 10 21 26 17 12 10 10 10 10 8 10 8 8 8 6 8 8 13 15 14 14 15 15 15 18 11 13 10 10 11 11 11 11 14 15 15 15 13 13 19 24 13 10 10 10 10 10 14 14 10 10 12 12 16 12 10 10 10 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no235_f20.g1 MSMg01no235_f20.g1 CHROMAT_FILE:
MSMg01no235_f20.g1 PHD_FILE: MSMg01no235_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:40 2005
         (287 letters)



>mm_chr17_31489544_31490230
          Length = 687

 Score =  482 bits (249), Expect = e-140
 Identities = 286/315 (90%), Gaps = 28/315 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctatactgctcttaaaagcagtagggtgtgagtgtggcagtagggt----------- 49
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 619 ctgctatactgctcttaaaagcagtagggtgtgagtgtggcagtagggtgtgtgtgtgtg 560

                                                                       
Query: 50  ---------------gtgtgtacacgtgccagagagagagagagagag-g-gagagagag 92
                          ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 559 tgcgcgcgcgcgcccgtgtgtacacgtgccagagagagagagagagagagagagagagag 500

                                                                       
Query: 93  agagagagagagctagctttcagtttctgaagcacttgtcagcagggctcagtctgaaag 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agagagagagagctagctttcagtttctgaagcacttgtcagcagggctcagtctgaaag 440

                                                                       
Query: 153 tgaaagactgcgggatagcttttcctcgtgggccatgggagattttctttcagggcttca 212
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgaaggactgcgggatagcttttcctcgtgggccatgggagattttctttcagggcttca 380

                                                                       
Query: 213 gtacgttgagctggatgcatgaactcacccttgaggtttcctgcactgaatacctggtgg 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtacgttgagctggatgcatgaactcacccttgaggtttcctgcactgaatacctggtgg 320

                          
Query: 273 ccatgagctgggagt 287
           |||||||||||||||
Sbjct: 319 ccatgagctgggagt 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information