BAC Information

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BAC

Clone NameMSMg01-235I04
Chromosome17 (Build37)
Map Location 75,390,198 - 75,390,483
singlet/doubletsinglet
Overlap genenone
Upstream geneSrd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672
Downstream geneLtbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235I04.T7 (MSMg01no235_i04.b1)MSMg01-235I04.TJ (MSMg01no235_i04.g1)
ACCAG401060AG401061
length735735
length of high quality
(start - end)
317 (46 - 362)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no235_i04.b1 PHD_FILE: MSMg01no235_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:52 2005CHROMAT_FILE: MSMg01no235_i04.g1 PHD_FILE: MSMg01no235_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGCGGAATACCAAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTTCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAAATGGACATAGTACTACCGGAAGATCCAGCAATACCTCTTCTGGGCA
TATATCCATATTATGTCCCACCCGCCCCCCACACGACACATGCTCCACTA
TGTTCATAGCAGCCTTATCCACAATAACCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATTTGGTACATTTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAA
AGGAACTCTCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAA
CTTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATTAAACTCA
AGAGAACGAAGACCAAAGTGTGGACACTTTGCCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTCCCTGCTTTTTTAAGTTC
TGGGATTACAGATGTGCACCACACCTGGCCGCCTCTCAGGGTGTTTTGGA
GGTGAATTATCTTGGCTTTTGTTCAGTTGCATACAATCCATTCCAACCTC
ATTCTTGAGGGGTAAGTGCTGTTCTTACATAATTATTTACCCCTCACCTA
TTTCCTCCAGCATCCTGAAGACATTTTTAGTCTTTCTACTTCTACTATTG
TTGGCAAAAAGCCAGAAATTGAGCAGATAACCTCCTCTCTCTCTCTGTCT
CTCTCTCTCTCTTCTTCTCTCTCTCTCCCCTTTAAGCTATTGTATTTGTT
TTTAGTATTTTGCCCTGCCCCTGGAATCTGAGTGTGGAGGTGAATATATT
TTGAAATTTTCTAGGATCCATAAAAACTTATGAGGGCTCAGTGGGTAAGG
ATGTTTGCCTCAAGGCTAATGGCCTGAGTTTGATCCCCAGACCCATATGG
TGGATGGGATAACTAACACTCATGGGGGAAAGCCTCCACATGCGTGTTAT
GGCATGACCATGTACACACCCACATACATGCACACATAATTTCAACACCT
AAAGCTTCCCTTGGTTGATGTCTGGAATTGATACTTCACTCTGGGAAGAT
CGTGTGTGTGCGTGCGTATGAGCCTCCGGATTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_i04.g1 MSMg01no235_i04.g1 CHROMAT_FILE:
MSMg01no235_i04.g1 PHD_FILE: MSMg01no235_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:52 2005
         (286 letters)



>mm_chr17_75389998_75390683
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgattccctgcttttttaagttctgggattacagatgtgcaccacacctggccgcctct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctgattccctgcttttttaagttctgggattacagatgtgcaccacacctggtcgcctct 260

                                                                       
Query: 61  cagggtgttttggaggtgaattatcttggcttttgttcagttgcatacaatccattccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggtgttttggaggtgaattatcttggcttttgttcagttgcatacaatccattccaa 320

                                                                       
Query: 121 cctcattcttgaggggtaagtgctgttcttacataattatttacccctcacctatttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcattcttgaggggtaagtgctgttcttacataattatttacccctcacctatttcct 380

                                                                       
Query: 181 ccagcatcctgaagacatttttagtctttctacttctactattgttggcaaaaagccaga 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcatcctgaagacacttttagtctttctacttctactattgttggcaaaaagccaga 440

                                                         
Query: 241 aattgagcagataacctcctctctctctctgtctctctctctctct 286
           ||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 441 aattgagcagataacctcctctctctctctccctctctctctctct 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)